Gene : Phvul.009G177200 P. vulgaris v2.1
Defline:  (1 of 1) K00766 - anthranilate phosphoribosyltransferase (trpD) Genomic Order:  1811
Name:  ? Phvul.009G177200 Secondary Identifier:  ? PAC:37152136
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRPSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G177200 0.5kb upstream 0.5kb upstream 5651 true Chr09: 26383528-26389178 Phaseolus vulgaris
Phvul.009G177200 0.5kb upstream 0.5kb upstream 500 false Chr09: 26383528-26384027 Phaseolus vulgaris
Phvul.009G177200 0.5kb downstream 0.5kb downstream 5651 true Chr09: 26384028-26389678 Phaseolus vulgaris
Phvul.009G177200 0.5kb downstream 0.5kb downstream 500 false Chr09: 26389179-26389678 Phaseolus vulgaris
Phvul.009G177200 1.0kb upstream 1.0kb upstream 6151 true Chr09: 26383028-26389178 Phaseolus vulgaris
Phvul.009G177200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 26383028-26384027 Phaseolus vulgaris
Phvul.009G177200 1.0kb downstream 1.0kb downstream 6151 true Chr09: 26384028-26390178 Phaseolus vulgaris
Phvul.009G177200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 26389179-26390178 Phaseolus vulgaris
Phvul.009G177200 2.0kb upstream 2.0kb upstream 7151 true Chr09: 26382028-26389178 Phaseolus vulgaris
Phvul.009G177200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 26382028-26384027 Phaseolus vulgaris
Phvul.009G177200 2.0kb downstream 2.0kb downstream 7151 true Chr09: 26384028-26391178 Phaseolus vulgaris
Phvul.009G177200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 26389179-26391178 Phaseolus vulgaris
Phvul.009G177200 5.0kb upstream 5.0kb upstream 10151 true Chr09: 26379028-26389178 Phaseolus vulgaris
Phvul.009G177200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 26379028-26384027 Phaseolus vulgaris
Phvul.009G177200 5.0kb downstream 5.0kb downstream 10151 true Chr09: 26384028-26394178 Phaseolus vulgaris
Phvul.009G177200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 26389179-26394178 Phaseolus vulgaris
Phvul.009G177200 10.0kb upstream 10.0kb upstream 15151 true Chr09: 26374028-26389178 Phaseolus vulgaris
Phvul.009G177200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 26374028-26384027 Phaseolus vulgaris
Phvul.009G177200 10.0kb downstream 10.0kb downstream 15151 true Chr09: 26384028-26399178 Phaseolus vulgaris
Phvul.009G177200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 26389179-26399178 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306969 5265 Fabidae View MSA
124063634 5270 Rosid View MSA
123740526 5271 Pentapetalae View MSA
122797383 5272 Eudicot View MSA
122046938 5273 Angiosperm View MSA
121344269 5274 Embryophyte View MSA
123424710 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 92.3669 0.0 258.751 High High
cufflinks 10.1004 0.0 27.087    
cufflinks 22.6688 0.0 58.6216    
cufflinks 48.4871 0.0 127.736 High High
cufflinks 8.0647 0.0 22.1225    
cufflinks 17.3486 0.0 45.0844    
cufflinks 7.02937 0.0 19.3788    
cufflinks 10.3714 0.0 27.7317    
cufflinks 8.19262 0.0 22.332    
cufflinks 5.19805 0.0 14.8096   Low
cufflinks 9.00509 0.0 24.4144    

0 Strain