Gene : Phvul.009G175800 P. vulgaris v2.1
Defline:  (1 of 4) K13525 - transitional endoplasmic reticulum ATPase (VCP, CDC48) Genomic Order:  1798
Name:  ? Phvul.009G175800 Secondary Identifier:  ? PAC:37151361
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G175800 0.5kb upstream 0.5kb upstream 5379 true Chr09: 26123774-26129152 Phaseolus vulgaris
Phvul.009G175800 0.5kb upstream 0.5kb upstream 500 false Chr09: 26128653-26129152 Phaseolus vulgaris
Phvul.009G175800 0.5kb downstream 0.5kb downstream 5379 true Chr09: 26123274-26128652 Phaseolus vulgaris
Phvul.009G175800 0.5kb downstream 0.5kb downstream 500 false Chr09: 26123274-26123773 Phaseolus vulgaris
Phvul.009G175800 1.0kb upstream 1.0kb upstream 5879 true Chr09: 26123774-26129652 Phaseolus vulgaris
Phvul.009G175800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 26128653-26129652 Phaseolus vulgaris
Phvul.009G175800 1.0kb downstream 1.0kb downstream 5879 true Chr09: 26122774-26128652 Phaseolus vulgaris
Phvul.009G175800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 26122774-26123773 Phaseolus vulgaris
Phvul.009G175800 2.0kb upstream 2.0kb upstream 6879 true Chr09: 26123774-26130652 Phaseolus vulgaris
Phvul.009G175800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 26128653-26130652 Phaseolus vulgaris
Phvul.009G175800 2.0kb downstream 2.0kb downstream 6879 true Chr09: 26121774-26128652 Phaseolus vulgaris
Phvul.009G175800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 26121774-26123773 Phaseolus vulgaris
Phvul.009G175800 5.0kb upstream 5.0kb upstream 9879 true Chr09: 26123774-26133652 Phaseolus vulgaris
Phvul.009G175800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 26128653-26133652 Phaseolus vulgaris
Phvul.009G175800 5.0kb downstream 5.0kb downstream 9879 true Chr09: 26118774-26128652 Phaseolus vulgaris
Phvul.009G175800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 26118774-26123773 Phaseolus vulgaris
Phvul.009G175800 10.0kb upstream 10.0kb upstream 14879 true Chr09: 26123774-26138652 Phaseolus vulgaris
Phvul.009G175800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 26128653-26138652 Phaseolus vulgaris
Phvul.009G175800 10.0kb downstream 10.0kb downstream 14879 true Chr09: 26113774-26128652 Phaseolus vulgaris
Phvul.009G175800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 26113774-26123773 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313229 5265 Fabidae View MSA
124070726 5270 Rosid View MSA
123742246 5271 Pentapetalae View MSA
122770246 5272 Eudicot View MSA
122048605 5273 Angiosperm View MSA
121347913 5274 Embryophyte View MSA
123424841 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.85885 0.0 5.54447    
cufflinks 1.85656 0.0 5.53884    
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.418667 0.0 1.49022 Low Low
cufflinks 1.08494 0.0 3.47174    
cufflinks 0.227064 0.0 0.845849 Low Low
cufflinks 4.17406 0.0 11.4609    
cufflinks 9.3751 0.0 24.3543   High
cufflinks 0.936883 0.0 3.02214    
cufflinks 14.0551 0.0 36.3298   High
cufflinks 3.40023 0.0 9.56581    

0 Strain