Gene : Phvul.009G168500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10836//PTHR10836:SF44 - GLYCERALDEHYDE 3-PHOSPHATE DEHYDROGENASE // SUBFAMILY NOT NAMED Genomic Order:  1726
Name:  ? Phvul.009G168500 Secondary Identifier:  ? PAC:37148672
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

6 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ANAEROFRUCAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris ANAGLYCOLYSIS-PWY Phaseolus vulgaris pathologic  
Pvulgaris GLUCONEO-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-1042 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris SUCSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G168500 0.5kb upstream 0.5kb upstream 3496 true Chr09: 25074111-25077606 Phaseolus vulgaris
Phvul.009G168500 0.5kb upstream 0.5kb upstream 500 false Chr09: 25077107-25077606 Phaseolus vulgaris
Phvul.009G168500 0.5kb downstream 0.5kb downstream 3496 true Chr09: 25073611-25077106 Phaseolus vulgaris
Phvul.009G168500 0.5kb downstream 0.5kb downstream 500 false Chr09: 25073611-25074110 Phaseolus vulgaris
Phvul.009G168500 1.0kb upstream 1.0kb upstream 3996 true Chr09: 25074111-25078106 Phaseolus vulgaris
Phvul.009G168500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 25077107-25078106 Phaseolus vulgaris
Phvul.009G168500 1.0kb downstream 1.0kb downstream 3996 true Chr09: 25073111-25077106 Phaseolus vulgaris
Phvul.009G168500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 25073111-25074110 Phaseolus vulgaris
Phvul.009G168500 2.0kb upstream 2.0kb upstream 4996 true Chr09: 25074111-25079106 Phaseolus vulgaris
Phvul.009G168500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 25077107-25079106 Phaseolus vulgaris
Phvul.009G168500 2.0kb downstream 2.0kb downstream 4996 true Chr09: 25072111-25077106 Phaseolus vulgaris
Phvul.009G168500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 25072111-25074110 Phaseolus vulgaris
Phvul.009G168500 5.0kb upstream 5.0kb upstream 7996 true Chr09: 25074111-25082106 Phaseolus vulgaris
Phvul.009G168500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 25077107-25082106 Phaseolus vulgaris
Phvul.009G168500 5.0kb downstream 5.0kb downstream 7996 true Chr09: 25069111-25077106 Phaseolus vulgaris
Phvul.009G168500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 25069111-25074110 Phaseolus vulgaris
Phvul.009G168500 10.0kb upstream 10.0kb upstream 12996 true Chr09: 25074111-25087106 Phaseolus vulgaris
Phvul.009G168500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 25077107-25087106 Phaseolus vulgaris
Phvul.009G168500 10.0kb downstream 10.0kb downstream 12996 true Chr09: 25064111-25077106 Phaseolus vulgaris
Phvul.009G168500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 25064111-25074110 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314378 5265 Fabidae View MSA
124074393 5270 Rosid View MSA
123750297 5271 Pentapetalae View MSA
122795499 5272 Eudicot View MSA
122051601 5273 Angiosperm View MSA
121347451 5274 Embryophyte View MSA
123425180 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 295.445 0.0 963.965 High Low
cufflinks 538.03 0.0 2013.7 High  
cufflinks 370.195 0.0 1271.25 High  
cufflinks 1115.28 0.0 5058.56 High High
cufflinks 553.622 0.0 2080.3 High  
cufflinks 340.775 0.0 1146.09 High  
cufflinks 359.08 0.0 1224.84 High  
cufflinks 392.709 0.0 1356.6 High  
cufflinks 477.272 0.0 1740.38 High  
cufflinks 271.831 0.0 871.326 High Low
cufflinks 621.786 0.0 2412.5 High  

0 Strain