Gene : Phvul.008G040800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23076:SF54 - ATP-DEPENDENT ZINC METALLOPROTEASE FTSH 6, CHLOROPLASTIC Genomic Order:  423
Name:  ? Phvul.008G040800 Secondary Identifier:  ? PAC:37159405
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G040800 0.5kb upstream 0.5kb upstream 3513 true Chr08: 3368692-3372204 Phaseolus vulgaris
Phvul.008G040800 0.5kb upstream 0.5kb upstream 500 false Chr08: 3368692-3369191 Phaseolus vulgaris
Phvul.008G040800 0.5kb downstream 0.5kb downstream 3513 true Chr08: 3369192-3372704 Phaseolus vulgaris
Phvul.008G040800 0.5kb downstream 0.5kb downstream 500 false Chr08: 3372205-3372704 Phaseolus vulgaris
Phvul.008G040800 1.0kb upstream 1.0kb upstream 4013 true Chr08: 3368192-3372204 Phaseolus vulgaris
Phvul.008G040800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3368192-3369191 Phaseolus vulgaris
Phvul.008G040800 1.0kb downstream 1.0kb downstream 4013 true Chr08: 3369192-3373204 Phaseolus vulgaris
Phvul.008G040800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3372205-3373204 Phaseolus vulgaris
Phvul.008G040800 2.0kb upstream 2.0kb upstream 5013 true Chr08: 3367192-3372204 Phaseolus vulgaris
Phvul.008G040800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3367192-3369191 Phaseolus vulgaris
Phvul.008G040800 2.0kb downstream 2.0kb downstream 5013 true Chr08: 3369192-3374204 Phaseolus vulgaris
Phvul.008G040800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3372205-3374204 Phaseolus vulgaris
Phvul.008G040800 5.0kb upstream 5.0kb upstream 8013 true Chr08: 3364192-3372204 Phaseolus vulgaris
Phvul.008G040800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3364192-3369191 Phaseolus vulgaris
Phvul.008G040800 5.0kb downstream 5.0kb downstream 8013 true Chr08: 3369192-3377204 Phaseolus vulgaris
Phvul.008G040800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3372205-3377204 Phaseolus vulgaris
Phvul.008G040800 10.0kb upstream 10.0kb upstream 13013 true Chr08: 3359192-3372204 Phaseolus vulgaris
Phvul.008G040800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3359192-3369191 Phaseolus vulgaris
Phvul.008G040800 10.0kb downstream 10.0kb downstream 13013 true Chr08: 3369192-3382204 Phaseolus vulgaris
Phvul.008G040800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3372205-3382204 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300352 5265 Fabidae View MSA
124066347 5270 Rosid View MSA
123741338 5271 Pentapetalae View MSA
122790774 5272 Eudicot View MSA
122046550 5273 Angiosperm View MSA
121351325 5274 Embryophyte View MSA
123426403 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.229166 0.0 0.872484 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.129557 0.0 0.519419 Low  
cufflinks 0.0229395 0.0 0.107714 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0304944 0.0 0.137344 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.553415 0.0 1.95489   High
cufflinks 0.0133854 0.0 0.0664057 Low Low

0 Strain