Gene : Phvul.008G033800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR10357//PTHR10357:SF157 - ALPHA-AMYLASE // SUBFAMILY NOT NAMED Genomic Order:  350
Name:  ? Phvul.008G033800 Secondary Identifier:  ? PAC:37160255
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G033800 0.5kb upstream 0.5kb upstream 11798 true Chr08: 2743453-2755250 Phaseolus vulgaris
Phvul.008G033800 0.5kb upstream 0.5kb upstream 500 false Chr08: 2743453-2743952 Phaseolus vulgaris
Phvul.008G033800 0.5kb downstream 0.5kb downstream 11798 true Chr08: 2743953-2755750 Phaseolus vulgaris
Phvul.008G033800 0.5kb downstream 0.5kb downstream 500 false Chr08: 2755251-2755750 Phaseolus vulgaris
Phvul.008G033800 1.0kb upstream 1.0kb upstream 12298 true Chr08: 2742953-2755250 Phaseolus vulgaris
Phvul.008G033800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 2742953-2743952 Phaseolus vulgaris
Phvul.008G033800 1.0kb downstream 1.0kb downstream 12298 true Chr08: 2743953-2756250 Phaseolus vulgaris
Phvul.008G033800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 2755251-2756250 Phaseolus vulgaris
Phvul.008G033800 2.0kb upstream 2.0kb upstream 13298 true Chr08: 2741953-2755250 Phaseolus vulgaris
Phvul.008G033800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 2741953-2743952 Phaseolus vulgaris
Phvul.008G033800 2.0kb downstream 2.0kb downstream 13298 true Chr08: 2743953-2757250 Phaseolus vulgaris
Phvul.008G033800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 2755251-2757250 Phaseolus vulgaris
Phvul.008G033800 5.0kb upstream 5.0kb upstream 16298 true Chr08: 2738953-2755250 Phaseolus vulgaris
Phvul.008G033800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 2738953-2743952 Phaseolus vulgaris
Phvul.008G033800 5.0kb downstream 5.0kb downstream 16298 true Chr08: 2743953-2760250 Phaseolus vulgaris
Phvul.008G033800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 2755251-2760250 Phaseolus vulgaris
Phvul.008G033800 10.0kb upstream 10.0kb upstream 21298 true Chr08: 2733953-2755250 Phaseolus vulgaris
Phvul.008G033800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 2733953-2743952 Phaseolus vulgaris
Phvul.008G033800 10.0kb downstream 10.0kb downstream 21298 true Chr08: 2743953-2765250 Phaseolus vulgaris
Phvul.008G033800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 2755251-2765250 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301333 5265 Fabidae View MSA
124070073 5270 Rosid View MSA
123751733 5271 Pentapetalae View MSA
122785800 5272 Eudicot View MSA
122050125 5273 Angiosperm View MSA
121348688 5274 Embryophyte View MSA
123427521 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.56502 0.0 7.27594   Low
cufflinks 9.10326 0.0 23.6098    
cufflinks 70.2036 0.0 207.923 High High
cufflinks 6.81832 0.0 17.9767    
cufflinks 11.1426 0.0 28.8459    
cufflinks 32.94 0.0 89.3572 High High
cufflinks 5.69744 0.0 15.1038    
cufflinks 6.13756 0.0 16.1588    
cufflinks 7.47687 0.0 19.5266    
cufflinks 4.98296 0.0 13.3697    
cufflinks 9.05987 0.0 23.5382    

0 Strain