Gene : Phvul.008G043500 P. vulgaris v2.1
Defline:  (1 of 180) PF00847 - AP2 domain (AP2) Genomic Order:  450
Name:  ? Phvul.008G043500 Secondary Identifier:  ? PAC:37158695
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G043500 0.5kb upstream 0.5kb upstream 3287 true Chr08: 3699735-3703021 Phaseolus vulgaris
Phvul.008G043500 0.5kb upstream 0.5kb upstream 500 false Chr08: 3702522-3703021 Phaseolus vulgaris
Phvul.008G043500 0.5kb downstream 0.5kb downstream 3287 true Chr08: 3699235-3702521 Phaseolus vulgaris
Phvul.008G043500 0.5kb downstream 0.5kb downstream 500 false Chr08: 3699235-3699734 Phaseolus vulgaris
Phvul.008G043500 1.0kb upstream 1.0kb upstream 3787 true Chr08: 3699735-3703521 Phaseolus vulgaris
Phvul.008G043500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3702522-3703521 Phaseolus vulgaris
Phvul.008G043500 1.0kb downstream 1.0kb downstream 3787 true Chr08: 3698735-3702521 Phaseolus vulgaris
Phvul.008G043500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3698735-3699734 Phaseolus vulgaris
Phvul.008G043500 2.0kb upstream 2.0kb upstream 4787 true Chr08: 3699735-3704521 Phaseolus vulgaris
Phvul.008G043500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3702522-3704521 Phaseolus vulgaris
Phvul.008G043500 2.0kb downstream 2.0kb downstream 4787 true Chr08: 3697735-3702521 Phaseolus vulgaris
Phvul.008G043500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3697735-3699734 Phaseolus vulgaris
Phvul.008G043500 5.0kb upstream 5.0kb upstream 7787 true Chr08: 3699735-3707521 Phaseolus vulgaris
Phvul.008G043500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3702522-3707521 Phaseolus vulgaris
Phvul.008G043500 5.0kb downstream 5.0kb downstream 7787 true Chr08: 3694735-3702521 Phaseolus vulgaris
Phvul.008G043500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3694735-3699734 Phaseolus vulgaris
Phvul.008G043500 10.0kb upstream 10.0kb upstream 12787 true Chr08: 3699735-3712521 Phaseolus vulgaris
Phvul.008G043500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3702522-3712521 Phaseolus vulgaris
Phvul.008G043500 10.0kb downstream 10.0kb downstream 12787 true Chr08: 3689735-3702521 Phaseolus vulgaris
Phvul.008G043500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3689735-3699734 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311178 5265 Fabidae View MSA
124070741 5270 Rosid View MSA
123749624 5271 Pentapetalae View MSA
122795805 5272 Eudicot View MSA
122048142 5273 Angiosperm View MSA
123428898 5275 Viridiplantae View MSA
121350345 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0332652 0.0 0.153116 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0308174 0.0 0.144705 Low  
cufflinks 0.0638195 0.0 0.275376 Low  
cufflinks 2.2516 0.0 6.95314    
cufflinks 16.1823 0.0 41.9608   High
cufflinks 0.311467 0.0 1.17815 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain