Gene : Phvul.008G041900 P. vulgaris v2.1
Defline:  (1 of 252) PF00076 - RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) (RRM_1) Genomic Order:  433
Name:  ? Phvul.008G041900 Secondary Identifier:  ? PAC:37161283
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G041900 0.5kb upstream 0.5kb upstream 4612 true Chr08: 3571338-3575949 Phaseolus vulgaris
Phvul.008G041900 0.5kb upstream 0.5kb upstream 500 false Chr08: 3571338-3571837 Phaseolus vulgaris
Phvul.008G041900 0.5kb downstream 0.5kb downstream 4612 true Chr08: 3571838-3576449 Phaseolus vulgaris
Phvul.008G041900 0.5kb downstream 0.5kb downstream 500 false Chr08: 3575950-3576449 Phaseolus vulgaris
Phvul.008G041900 1.0kb upstream 1.0kb upstream 5112 true Chr08: 3570838-3575949 Phaseolus vulgaris
Phvul.008G041900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3570838-3571837 Phaseolus vulgaris
Phvul.008G041900 1.0kb downstream 1.0kb downstream 5112 true Chr08: 3571838-3576949 Phaseolus vulgaris
Phvul.008G041900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3575950-3576949 Phaseolus vulgaris
Phvul.008G041900 2.0kb upstream 2.0kb upstream 6112 true Chr08: 3569838-3575949 Phaseolus vulgaris
Phvul.008G041900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3569838-3571837 Phaseolus vulgaris
Phvul.008G041900 2.0kb downstream 2.0kb downstream 6112 true Chr08: 3571838-3577949 Phaseolus vulgaris
Phvul.008G041900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3575950-3577949 Phaseolus vulgaris
Phvul.008G041900 5.0kb upstream 5.0kb upstream 9112 true Chr08: 3566838-3575949 Phaseolus vulgaris
Phvul.008G041900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3566838-3571837 Phaseolus vulgaris
Phvul.008G041900 5.0kb downstream 5.0kb downstream 9112 true Chr08: 3571838-3580949 Phaseolus vulgaris
Phvul.008G041900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3575950-3580949 Phaseolus vulgaris
Phvul.008G041900 10.0kb upstream 10.0kb upstream 14112 true Chr08: 3561838-3575949 Phaseolus vulgaris
Phvul.008G041900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3561838-3571837 Phaseolus vulgaris
Phvul.008G041900 10.0kb downstream 10.0kb downstream 14112 true Chr08: 3571838-3585949 Phaseolus vulgaris
Phvul.008G041900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3575950-3585949 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306371 5265 Fabidae View MSA
124065351 5270 Rosid View MSA
123742735 5271 Pentapetalae View MSA
122796619 5272 Eudicot View MSA
122041575 5273 Angiosperm View MSA
121309864 5274 Embryophyte View MSA
123347507 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.775 0.0 43.0867    
cufflinks 5.25387 0.0 20.4003    
cufflinks 21.784 0.0 71.07   High
cufflinks 8.06689 0.0 32.7419    
cufflinks 8.61757 0.0 34.4498    
cufflinks 5.99331 0.0 21.9343    
cufflinks 7.00247 0.0 24.8182    
cufflinks 3.06978 0.0 13.8454   Low
cufflinks 5.37686 0.0 16.7701    
cufflinks 7.77476 0.0 31.3778    
cufflinks 7.36274 0.0 30.8326    

0 Strain