Gene : Phvul.008G020200 P. vulgaris v2.1
Defline:  (1 of 3) K10525 - allene oxide cyclase (AOC) Genomic Order:  203
Name:  ? Phvul.008G020200 Secondary Identifier:  ? PAC:37158481
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-735 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G020200 0.5kb upstream 0.5kb upstream 2530 true Chr08: 1679258-1681787 Phaseolus vulgaris
Phvul.008G020200 0.5kb upstream 0.5kb upstream 500 false Chr08: 1681288-1681787 Phaseolus vulgaris
Phvul.008G020200 0.5kb downstream 0.5kb downstream 2530 true Chr08: 1678758-1681287 Phaseolus vulgaris
Phvul.008G020200 0.5kb downstream 0.5kb downstream 500 false Chr08: 1678758-1679257 Phaseolus vulgaris
Phvul.008G020200 1.0kb upstream 1.0kb upstream 3030 true Chr08: 1679258-1682287 Phaseolus vulgaris
Phvul.008G020200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1681288-1682287 Phaseolus vulgaris
Phvul.008G020200 1.0kb downstream 1.0kb downstream 3030 true Chr08: 1678258-1681287 Phaseolus vulgaris
Phvul.008G020200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1678258-1679257 Phaseolus vulgaris
Phvul.008G020200 2.0kb upstream 2.0kb upstream 4030 true Chr08: 1679258-1683287 Phaseolus vulgaris
Phvul.008G020200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1681288-1683287 Phaseolus vulgaris
Phvul.008G020200 2.0kb downstream 2.0kb downstream 4030 true Chr08: 1677258-1681287 Phaseolus vulgaris
Phvul.008G020200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1677258-1679257 Phaseolus vulgaris
Phvul.008G020200 5.0kb upstream 5.0kb upstream 7030 true Chr08: 1679258-1686287 Phaseolus vulgaris
Phvul.008G020200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1681288-1686287 Phaseolus vulgaris
Phvul.008G020200 5.0kb downstream 5.0kb downstream 7030 true Chr08: 1674258-1681287 Phaseolus vulgaris
Phvul.008G020200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1674258-1679257 Phaseolus vulgaris
Phvul.008G020200 10.0kb upstream 10.0kb upstream 12030 true Chr08: 1679258-1691287 Phaseolus vulgaris
Phvul.008G020200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1681288-1691287 Phaseolus vulgaris
Phvul.008G020200 10.0kb downstream 10.0kb downstream 12030 true Chr08: 1669258-1681287 Phaseolus vulgaris
Phvul.008G020200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1669258-1679257 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313475 5265 Fabidae View MSA
124066771 5270 Rosid View MSA
123739753 5271 Pentapetalae View MSA
122789032 5272 Eudicot View MSA
122045897 5273 Angiosperm View MSA
121350459 5274 Embryophyte View MSA
123426138 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.8146 0.0 60.7469    
cufflinks 21.3002 0.0 57.2042    
cufflinks 15.6989 0.0 43.0809    
cufflinks 150.951 0.0 410.837 High High
cufflinks 58.3615 0.0 150.87 High  
cufflinks 34.2253 0.0 89.2191 High  
cufflinks 23.3613 0.0 62.3349    
cufflinks 10.0386 0.0 28.8354    
cufflinks 18.4179 0.0 50.1602    
cufflinks 2.47216 0.0 8.34866   Low
cufflinks 62.3626 0.0 161.289 High  

0 Strain