Gene : Phvul.008G022100 P. vulgaris v2.1

Defline:  (1 of 4) 4.1.1.50 - Adenosylmethionine decarboxylase / S-adenosyl-L-methionine decarboxylase Genomic Order:  224
Name:  ? Phvul.008G022100 Secondary Identifier:  ? PAC:37159442

Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris ARGSPECAT-PWY Phaseolus vulgaris pathologic  
Pvulgaris BSUBPOLYAMSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris POLYAMINSYN3-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-7528 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G022100 0.5kb upstream 0.5kb upstream 3057 true Chr08: 1842795-1845851 Phaseolus vulgaris
Phvul.008G022100 0.5kb upstream 0.5kb upstream 500 false Chr08: 1842795-1843294 Phaseolus vulgaris
Phvul.008G022100 0.5kb downstream 0.5kb downstream 3057 true Chr08: 1843295-1846351 Phaseolus vulgaris
Phvul.008G022100 0.5kb downstream 0.5kb downstream 500 false Chr08: 1845852-1846351 Phaseolus vulgaris
Phvul.008G022100 1.0kb upstream 1.0kb upstream 3557 true Chr08: 1842295-1845851 Phaseolus vulgaris
Phvul.008G022100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1842295-1843294 Phaseolus vulgaris
Phvul.008G022100 1.0kb downstream 1.0kb downstream 3557 true Chr08: 1843295-1846851 Phaseolus vulgaris
Phvul.008G022100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1845852-1846851 Phaseolus vulgaris
Phvul.008G022100 2.0kb upstream 2.0kb upstream 4557 true Chr08: 1841295-1845851 Phaseolus vulgaris
Phvul.008G022100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1841295-1843294 Phaseolus vulgaris
Phvul.008G022100 2.0kb downstream 2.0kb downstream 4557 true Chr08: 1843295-1847851 Phaseolus vulgaris
Phvul.008G022100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1845852-1847851 Phaseolus vulgaris
Phvul.008G022100 5.0kb upstream 5.0kb upstream 7557 true Chr08: 1838295-1845851 Phaseolus vulgaris
Phvul.008G022100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1838295-1843294 Phaseolus vulgaris
Phvul.008G022100 5.0kb downstream 5.0kb downstream 7557 true Chr08: 1843295-1850851 Phaseolus vulgaris
Phvul.008G022100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1845852-1850851 Phaseolus vulgaris
Phvul.008G022100 10.0kb upstream 10.0kb upstream 12557 true Chr08: 1833295-1845851 Phaseolus vulgaris
Phvul.008G022100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1833295-1843294 Phaseolus vulgaris
Phvul.008G022100 10.0kb downstream 10.0kb downstream 12557 true Chr08: 1843295-1855851 Phaseolus vulgaris
Phvul.008G022100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1845852-1855851 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299314 5265 Fabidae View MSA
124073000 5270 Rosid View MSA
123746333 5271 Pentapetalae View MSA
122785858 5272 Eudicot View MSA
122049143 5273 Angiosperm View MSA
121348944 5274 Embryophyte View MSA
123423800 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 392.165 0.0 1561.59 High High
cufflinks 27.5506 0.0 76.9846    
cufflinks 9.60687 0.0 29.8413    
cufflinks 85.5772 0.0 264.774 High  
cufflinks 21.1607 0.0 59.8192    
cufflinks 1.93211 0.0 6.86425   Low
cufflinks 73.4257 0.0 222.676 High  
cufflinks 35.8681 0.0 100.718 High  
cufflinks 44.3019 0.0 124.636 High  
cufflinks 13.4413 0.0 40.0485    
cufflinks 43.0246 0.0 120.77 High  

0 Strain