Gene : Phvul.008G021700 P. vulgaris v2.1
Defline:  (1 of 2) K03025 - DNA-directed RNA polymerase III subunit RPC6 (RPC6, POLR3F) Genomic Order:  220
Name:  ? Phvul.008G021700 Secondary Identifier:  ? PAC:37157961
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G021700 0.5kb upstream 0.5kb upstream 3073 true Chr08: 1821747-1824819 Phaseolus vulgaris
Phvul.008G021700 0.5kb upstream 0.5kb upstream 500 false Chr08: 1821747-1822246 Phaseolus vulgaris
Phvul.008G021700 0.5kb downstream 0.5kb downstream 3073 true Chr08: 1822247-1825319 Phaseolus vulgaris
Phvul.008G021700 0.5kb downstream 0.5kb downstream 500 false Chr08: 1824820-1825319 Phaseolus vulgaris
Phvul.008G021700 1.0kb upstream 1.0kb upstream 3573 true Chr08: 1821247-1824819 Phaseolus vulgaris
Phvul.008G021700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1821247-1822246 Phaseolus vulgaris
Phvul.008G021700 1.0kb downstream 1.0kb downstream 3573 true Chr08: 1822247-1825819 Phaseolus vulgaris
Phvul.008G021700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1824820-1825819 Phaseolus vulgaris
Phvul.008G021700 2.0kb upstream 2.0kb upstream 4573 true Chr08: 1820247-1824819 Phaseolus vulgaris
Phvul.008G021700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1820247-1822246 Phaseolus vulgaris
Phvul.008G021700 2.0kb downstream 2.0kb downstream 4573 true Chr08: 1822247-1826819 Phaseolus vulgaris
Phvul.008G021700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1824820-1826819 Phaseolus vulgaris
Phvul.008G021700 5.0kb upstream 5.0kb upstream 7573 true Chr08: 1817247-1824819 Phaseolus vulgaris
Phvul.008G021700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1817247-1822246 Phaseolus vulgaris
Phvul.008G021700 5.0kb downstream 5.0kb downstream 7573 true Chr08: 1822247-1829819 Phaseolus vulgaris
Phvul.008G021700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1824820-1829819 Phaseolus vulgaris
Phvul.008G021700 10.0kb upstream 10.0kb upstream 12573 true Chr08: 1812247-1824819 Phaseolus vulgaris
Phvul.008G021700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1812247-1822246 Phaseolus vulgaris
Phvul.008G021700 10.0kb downstream 10.0kb downstream 12573 true Chr08: 1822247-1834819 Phaseolus vulgaris
Phvul.008G021700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1824820-1834819 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306479 5265 Fabidae View MSA
124066352 5270 Rosid View MSA
123744384 5271 Pentapetalae View MSA
122788690 5272 Eudicot View MSA
122046766 5273 Angiosperm View MSA
121344415 5274 Embryophyte View MSA
123425900 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 7.29208 0.0 21.2653   High
cufflinks 2.60547 0.0 8.54306    
cufflinks 6.01033 0.0 17.855   High
cufflinks 4.60101 0.0 14.3081    
cufflinks 2.41839 0.0 8.07522    
cufflinks 2.72462 0.0 8.87328    
cufflinks 2.5414 0.0 8.33169    
cufflinks 2.07925 0.0 6.94056   Low
cufflinks 2.40749 0.0 7.95782    
cufflinks 4.7016 0.0 14.4768    
cufflinks 2.89197 0.0 9.42966    

0 Strain