Gene : Phvul.008G010100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11538:SF41 - PHENYLALANINE--TRNA LIGASE, MITOCHONDRIAL Genomic Order:  101
Name:  ? Phvul.008G010100 Secondary Identifier:  ? PAC:37161322
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris TRNA-CHARGING-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G010100 0.5kb upstream 0.5kb upstream 7658 true Chr08: 866830-874487 Phaseolus vulgaris
Phvul.008G010100 0.5kb upstream 0.5kb upstream 500 false Chr08: 873988-874487 Phaseolus vulgaris
Phvul.008G010100 0.5kb downstream 0.5kb downstream 7658 true Chr08: 866330-873987 Phaseolus vulgaris
Phvul.008G010100 0.5kb downstream 0.5kb downstream 500 false Chr08: 866330-866829 Phaseolus vulgaris
Phvul.008G010100 1.0kb upstream 1.0kb upstream 8158 true Chr08: 866830-874987 Phaseolus vulgaris
Phvul.008G010100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 873988-874987 Phaseolus vulgaris
Phvul.008G010100 1.0kb downstream 1.0kb downstream 8158 true Chr08: 865830-873987 Phaseolus vulgaris
Phvul.008G010100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 865830-866829 Phaseolus vulgaris
Phvul.008G010100 2.0kb upstream 2.0kb upstream 9158 true Chr08: 866830-875987 Phaseolus vulgaris
Phvul.008G010100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 873988-875987 Phaseolus vulgaris
Phvul.008G010100 2.0kb downstream 2.0kb downstream 9158 true Chr08: 864830-873987 Phaseolus vulgaris
Phvul.008G010100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 864830-866829 Phaseolus vulgaris
Phvul.008G010100 5.0kb upstream 5.0kb upstream 12158 true Chr08: 866830-878987 Phaseolus vulgaris
Phvul.008G010100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 873988-878987 Phaseolus vulgaris
Phvul.008G010100 5.0kb downstream 5.0kb downstream 12158 true Chr08: 861830-873987 Phaseolus vulgaris
Phvul.008G010100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 861830-866829 Phaseolus vulgaris
Phvul.008G010100 10.0kb upstream 10.0kb upstream 17158 true Chr08: 866830-883987 Phaseolus vulgaris
Phvul.008G010100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 873988-883987 Phaseolus vulgaris
Phvul.008G010100 10.0kb downstream 10.0kb downstream 17158 true Chr08: 856830-873987 Phaseolus vulgaris
Phvul.008G010100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 856830-866829 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299382 5265 Fabidae View MSA
124068878 5270 Rosid View MSA
123737426 5271 Pentapetalae View MSA
122793122 5272 Eudicot View MSA
122044413 5273 Angiosperm View MSA
121344364 5274 Embryophyte View MSA
123424081 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.2399 0.0 32.399    
cufflinks 8.31329 0.0 22.686    
cufflinks 56.4575 0.0 150.83 High High
cufflinks 11.4011 0.0 30.5706    
cufflinks 8.16616 0.0 22.4782    
cufflinks 21.4516 0.0 55.5059   High
cufflinks 4.17405 0.0 12.185   Low
cufflinks 4.34526 0.0 12.5546   Low
cufflinks 4.51354 0.0 13.1103    
cufflinks 10.2755 0.0 27.5802    
cufflinks 7.10448 0.0 19.771    

0 Strain