Gene : Phvul.008G014400 P. vulgaris v2.1
Defline:  (1 of 2) 1.2.4.2 - Oxoglutarate dehydrogenase (succinyl-transferring) / Oxoglutarate dehydrogenase (lipoamide) Genomic Order:  145
Name:  ? Phvul.008G014400 Secondary Identifier:  ? PAC:37158783
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5084 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G014400 0.5kb upstream 0.5kb upstream 7477 true Chr08: 1173293-1180769 Phaseolus vulgaris
Phvul.008G014400 0.5kb upstream 0.5kb upstream 500 false Chr08: 1173293-1173792 Phaseolus vulgaris
Phvul.008G014400 0.5kb downstream 0.5kb downstream 7477 true Chr08: 1173793-1181269 Phaseolus vulgaris
Phvul.008G014400 0.5kb downstream 0.5kb downstream 500 false Chr08: 1180770-1181269 Phaseolus vulgaris
Phvul.008G014400 1.0kb upstream 1.0kb upstream 7977 true Chr08: 1172793-1180769 Phaseolus vulgaris
Phvul.008G014400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1172793-1173792 Phaseolus vulgaris
Phvul.008G014400 1.0kb downstream 1.0kb downstream 7977 true Chr08: 1173793-1181769 Phaseolus vulgaris
Phvul.008G014400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1180770-1181769 Phaseolus vulgaris
Phvul.008G014400 2.0kb upstream 2.0kb upstream 8977 true Chr08: 1171793-1180769 Phaseolus vulgaris
Phvul.008G014400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1171793-1173792 Phaseolus vulgaris
Phvul.008G014400 2.0kb downstream 2.0kb downstream 8977 true Chr08: 1173793-1182769 Phaseolus vulgaris
Phvul.008G014400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1180770-1182769 Phaseolus vulgaris
Phvul.008G014400 5.0kb upstream 5.0kb upstream 11977 true Chr08: 1168793-1180769 Phaseolus vulgaris
Phvul.008G014400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1168793-1173792 Phaseolus vulgaris
Phvul.008G014400 5.0kb downstream 5.0kb downstream 11977 true Chr08: 1173793-1185769 Phaseolus vulgaris
Phvul.008G014400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1180770-1185769 Phaseolus vulgaris
Phvul.008G014400 10.0kb upstream 10.0kb upstream 16977 true Chr08: 1163793-1180769 Phaseolus vulgaris
Phvul.008G014400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1163793-1173792 Phaseolus vulgaris
Phvul.008G014400 10.0kb downstream 10.0kb downstream 16977 true Chr08: 1173793-1190769 Phaseolus vulgaris
Phvul.008G014400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1180770-1190769 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311789 5265 Fabidae View MSA
124067534 5270 Rosid View MSA
123744941 5271 Pentapetalae View MSA
122793820 5272 Eudicot View MSA
122044869 5273 Angiosperm View MSA
121344749 5274 Embryophyte View MSA
123424102 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 29.3165 0.0 79.3963   Low
cufflinks 36.3337 0.0 100.386 High  
cufflinks 30.4733 0.0 82.9259    
cufflinks 37.4395 0.0 102.946 High  
cufflinks 36.4308 0.0 100.226 High  
cufflinks 31.0591 0.0 84.5796    
cufflinks 37.3413 0.0 103.543 High  
cufflinks 37.9607 0.0 105.652 High  
cufflinks 63.1978 0.0 186.31 High High
cufflinks 52.7818 0.0 151.756 High High
cufflinks 37.2328 0.0 102.62 High  

0 Strain