Gene : Phvul.008G014500 P. vulgaris v2.1
Defline:  (1 of 19) PF16135 - TPL-binding domain in jasmonate signalling (Jas) Genomic Order:  146
Name:  ? Phvul.008G014500 Secondary Identifier:  ? PAC:37158665
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G014500 0.5kb upstream 0.5kb upstream 6530 true Chr08: 1181812-1188341 Phaseolus vulgaris
Phvul.008G014500 0.5kb upstream 0.5kb upstream 500 false Chr08: 1187842-1188341 Phaseolus vulgaris
Phvul.008G014500 0.5kb downstream 0.5kb downstream 6530 true Chr08: 1181312-1187841 Phaseolus vulgaris
Phvul.008G014500 0.5kb downstream 0.5kb downstream 500 false Chr08: 1181312-1181811 Phaseolus vulgaris
Phvul.008G014500 1.0kb upstream 1.0kb upstream 7030 true Chr08: 1181812-1188841 Phaseolus vulgaris
Phvul.008G014500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1187842-1188841 Phaseolus vulgaris
Phvul.008G014500 1.0kb downstream 1.0kb downstream 7030 true Chr08: 1180812-1187841 Phaseolus vulgaris
Phvul.008G014500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1180812-1181811 Phaseolus vulgaris
Phvul.008G014500 2.0kb upstream 2.0kb upstream 8030 true Chr08: 1181812-1189841 Phaseolus vulgaris
Phvul.008G014500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1187842-1189841 Phaseolus vulgaris
Phvul.008G014500 2.0kb downstream 2.0kb downstream 8030 true Chr08: 1179812-1187841 Phaseolus vulgaris
Phvul.008G014500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1179812-1181811 Phaseolus vulgaris
Phvul.008G014500 5.0kb upstream 5.0kb upstream 11030 true Chr08: 1181812-1192841 Phaseolus vulgaris
Phvul.008G014500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1187842-1192841 Phaseolus vulgaris
Phvul.008G014500 5.0kb downstream 5.0kb downstream 11030 true Chr08: 1176812-1187841 Phaseolus vulgaris
Phvul.008G014500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1176812-1181811 Phaseolus vulgaris
Phvul.008G014500 10.0kb upstream 10.0kb upstream 16030 true Chr08: 1181812-1197841 Phaseolus vulgaris
Phvul.008G014500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1187842-1197841 Phaseolus vulgaris
Phvul.008G014500 10.0kb downstream 10.0kb downstream 16030 true Chr08: 1171812-1187841 Phaseolus vulgaris
Phvul.008G014500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1171812-1181811 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122305570 5265 Fabidae View MSA
124072132 5270 Rosid View MSA
123747463 5271 Pentapetalae View MSA
122794643 5272 Eudicot View MSA
122051104 5273 Angiosperm View MSA
121312296 5274 Embryophyte View MSA
123349483 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.37425 0.0 35.4371    
cufflinks 11.0633 0.0 41.1416    
cufflinks 13.4478 0.0 47.953    
cufflinks 5.11113 0.0 22.0688   Low
cufflinks 10.187 0.0 38.323    
cufflinks 12.1989 0.0 44.0249    
cufflinks 15.3888 0.0 54.5351    
cufflinks 14.4063 0.0 51.0124    
cufflinks 13.4843 0.0 48.3836    
cufflinks 16.6105 0.0 58.6809   High
cufflinks 9.44806 0.0 36.216    

0 Strain