Gene : Phvul.008G013800 P. vulgaris v2.1
Defline:  (1 of 1) K10880 - DNA-repair protein XRCC3 (XRCC3) Genomic Order:  139
Name:  ? Phvul.008G013800 Secondary Identifier:  ? PAC:37160137
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G013800 0.5kb upstream 0.5kb upstream 1355 true Chr08: 1146970-1148324 Phaseolus vulgaris
Phvul.008G013800 0.5kb upstream 0.5kb upstream 500 false Chr08: 1146970-1147469 Phaseolus vulgaris
Phvul.008G013800 0.5kb downstream 0.5kb downstream 1355 true Chr08: 1147470-1148824 Phaseolus vulgaris
Phvul.008G013800 0.5kb downstream 0.5kb downstream 500 false Chr08: 1148325-1148824 Phaseolus vulgaris
Phvul.008G013800 1.0kb upstream 1.0kb upstream 1855 true Chr08: 1146470-1148324 Phaseolus vulgaris
Phvul.008G013800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1146470-1147469 Phaseolus vulgaris
Phvul.008G013800 1.0kb downstream 1.0kb downstream 1855 true Chr08: 1147470-1149324 Phaseolus vulgaris
Phvul.008G013800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1148325-1149324 Phaseolus vulgaris
Phvul.008G013800 2.0kb upstream 2.0kb upstream 2855 true Chr08: 1145470-1148324 Phaseolus vulgaris
Phvul.008G013800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1145470-1147469 Phaseolus vulgaris
Phvul.008G013800 2.0kb downstream 2.0kb downstream 2855 true Chr08: 1147470-1150324 Phaseolus vulgaris
Phvul.008G013800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1148325-1150324 Phaseolus vulgaris
Phvul.008G013800 5.0kb upstream 5.0kb upstream 5855 true Chr08: 1142470-1148324 Phaseolus vulgaris
Phvul.008G013800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1142470-1147469 Phaseolus vulgaris
Phvul.008G013800 5.0kb downstream 5.0kb downstream 5855 true Chr08: 1147470-1153324 Phaseolus vulgaris
Phvul.008G013800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1148325-1153324 Phaseolus vulgaris
Phvul.008G013800 10.0kb upstream 10.0kb upstream 10855 true Chr08: 1137470-1148324 Phaseolus vulgaris
Phvul.008G013800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1137470-1147469 Phaseolus vulgaris
Phvul.008G013800 10.0kb downstream 10.0kb downstream 10855 true Chr08: 1147470-1158324 Phaseolus vulgaris
Phvul.008G013800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1148325-1158324 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309997 5265 Fabidae View MSA
124069391 5270 Rosid View MSA
123741903 5271 Pentapetalae View MSA
122794099 5272 Eudicot View MSA
122048125 5273 Angiosperm View MSA
121349692 5274 Embryophyte View MSA
123425830 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 6.40071 0.0 19.3322    
cufflinks 4.49932 0.0 14.2951    
cufflinks 3.95589 0.0 12.9019    
cufflinks 6.74548 0.0 20.067   High
cufflinks 6.70818 0.0 20.0042   High
cufflinks 5.23206 0.0 16.4251    
cufflinks 3.46094 0.0 11.2281   Low
cufflinks 3.15123 0.0 10.4905   Low
cufflinks 3.9733 0.0 12.7275    
cufflinks 6.2152 0.0 18.863    
cufflinks 5.60471 0.0 17.1202    

0 Strain