Gene : Phvul.008G016700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR21240 - 2-AMINO-3-CARBOXYLMUCONATE-6-SEMIALDEHYDE DECARBOXYLASE Genomic Order:  168
Name:  ? Phvul.008G016700 Secondary Identifier:  ? PAC:37158122
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G016700 0.5kb upstream 0.5kb upstream 5027 true Chr08: 1351786-1356812 Phaseolus vulgaris
Phvul.008G016700 0.5kb upstream 0.5kb upstream 500 false Chr08: 1356313-1356812 Phaseolus vulgaris
Phvul.008G016700 0.5kb downstream 0.5kb downstream 5027 true Chr08: 1351286-1356312 Phaseolus vulgaris
Phvul.008G016700 0.5kb downstream 0.5kb downstream 500 false Chr08: 1351286-1351785 Phaseolus vulgaris
Phvul.008G016700 1.0kb upstream 1.0kb upstream 5527 true Chr08: 1351786-1357312 Phaseolus vulgaris
Phvul.008G016700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 1356313-1357312 Phaseolus vulgaris
Phvul.008G016700 1.0kb downstream 1.0kb downstream 5527 true Chr08: 1350786-1356312 Phaseolus vulgaris
Phvul.008G016700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 1350786-1351785 Phaseolus vulgaris
Phvul.008G016700 2.0kb upstream 2.0kb upstream 6527 true Chr08: 1351786-1358312 Phaseolus vulgaris
Phvul.008G016700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 1356313-1358312 Phaseolus vulgaris
Phvul.008G016700 2.0kb downstream 2.0kb downstream 6527 true Chr08: 1349786-1356312 Phaseolus vulgaris
Phvul.008G016700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 1349786-1351785 Phaseolus vulgaris
Phvul.008G016700 5.0kb upstream 5.0kb upstream 9527 true Chr08: 1351786-1361312 Phaseolus vulgaris
Phvul.008G016700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 1356313-1361312 Phaseolus vulgaris
Phvul.008G016700 5.0kb downstream 5.0kb downstream 9527 true Chr08: 1346786-1356312 Phaseolus vulgaris
Phvul.008G016700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 1346786-1351785 Phaseolus vulgaris
Phvul.008G016700 10.0kb upstream 10.0kb upstream 14527 true Chr08: 1351786-1366312 Phaseolus vulgaris
Phvul.008G016700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 1356313-1366312 Phaseolus vulgaris
Phvul.008G016700 10.0kb downstream 10.0kb downstream 14527 true Chr08: 1341786-1356312 Phaseolus vulgaris
Phvul.008G016700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 1341786-1351785 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041304 5273 Angiosperm View MSA
122308132 5265 Fabidae View MSA
124062191 5270 Rosid View MSA
123739774 5271 Pentapetalae View MSA
122787272 5272 Eudicot View MSA
121344175 5274 Embryophyte View MSA
123425366 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.55122 0.0 22.0771    
cufflinks 7.1661 0.0 35.1079    
cufflinks 33.2703 0.0 130.415   High
cufflinks 4.21096 0.0 21.7206    
cufflinks 2.32421 0.0 17.017    
cufflinks 16.3706 0.0 68.7275   High
cufflinks 1.9728 0.0 14.1813    
cufflinks 3.04839 0.0 17.4423    
cufflinks 1.44119 0.0 12.8411   Low
cufflinks 4.64083 0.0 23.0128    
cufflinks 2.90992 0.0 18.7984    

0 Strain