Gene : Phvul.008G037500 P. vulgaris v2.1
Defline:  (1 of 37) PF01357//PF03330 - Pollen allergen (Pollen_allerg_1) // Rare lipoprotein A (RlpA)-like double-psi beta-barrel (DPBB_1) Genomic Order:  389
Name:  ? Phvul.008G037500 Secondary Identifier:  ? PAC:37159329
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G037500 0.5kb upstream 0.5kb upstream 2106 true Chr08: 3075998-3078103 Phaseolus vulgaris
Phvul.008G037500 0.5kb upstream 0.5kb upstream 500 false Chr08: 3077604-3078103 Phaseolus vulgaris
Phvul.008G037500 0.5kb downstream 0.5kb downstream 2106 true Chr08: 3075498-3077603 Phaseolus vulgaris
Phvul.008G037500 0.5kb downstream 0.5kb downstream 500 false Chr08: 3075498-3075997 Phaseolus vulgaris
Phvul.008G037500 1.0kb upstream 1.0kb upstream 2606 true Chr08: 3075998-3078603 Phaseolus vulgaris
Phvul.008G037500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 3077604-3078603 Phaseolus vulgaris
Phvul.008G037500 1.0kb downstream 1.0kb downstream 2606 true Chr08: 3074998-3077603 Phaseolus vulgaris
Phvul.008G037500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 3074998-3075997 Phaseolus vulgaris
Phvul.008G037500 2.0kb upstream 2.0kb upstream 3606 true Chr08: 3075998-3079603 Phaseolus vulgaris
Phvul.008G037500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 3077604-3079603 Phaseolus vulgaris
Phvul.008G037500 2.0kb downstream 2.0kb downstream 3606 true Chr08: 3073998-3077603 Phaseolus vulgaris
Phvul.008G037500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 3073998-3075997 Phaseolus vulgaris
Phvul.008G037500 5.0kb upstream 5.0kb upstream 6606 true Chr08: 3075998-3082603 Phaseolus vulgaris
Phvul.008G037500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 3077604-3082603 Phaseolus vulgaris
Phvul.008G037500 5.0kb downstream 5.0kb downstream 6606 true Chr08: 3070998-3077603 Phaseolus vulgaris
Phvul.008G037500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 3070998-3075997 Phaseolus vulgaris
Phvul.008G037500 10.0kb upstream 10.0kb upstream 11606 true Chr08: 3075998-3087603 Phaseolus vulgaris
Phvul.008G037500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 3077604-3087603 Phaseolus vulgaris
Phvul.008G037500 10.0kb downstream 10.0kb downstream 11606 true Chr08: 3065998-3077603 Phaseolus vulgaris
Phvul.008G037500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 3065998-3075997 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122310156 5265 Fabidae View MSA
124070528 5270 Rosid View MSA
123753539 5271 Pentapetalae View MSA
122795213 5272 Eudicot View MSA
122043079 5273 Angiosperm View MSA
123429074 5275 Viridiplantae View MSA
121351680 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 32.3244 0.0 83.6533    
cufflinks 146.896 0.0 412.86 High  
cufflinks 46.3333 0.0 120.094 High  
cufflinks 522.742 0.0 1775.29 High High
cufflinks 50.2632 0.0 130.291 High  
cufflinks 73.0151 0.0 192.801 High  
cufflinks 1.59295 0.0 5.417   Low
cufflinks 0.607386 0.0 2.26247   Low
cufflinks 4.41328 0.0 13.3757    
cufflinks 3.25269 0.0 10.2189    
cufflinks 58.1472 0.0 151.405 High  

0 Strain