Gene : Phvul.008G006800 P. vulgaris v2.1
Defline:  (1 of 1) K14848 - ribosome assembly protein RRB1 (RRB1, GRWD1) Genomic Order:  69
Name:  ? Phvul.008G006800 Secondary Identifier:  ? PAC:37158292
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G006800 0.5kb upstream 0.5kb upstream 7129 true Chr08: 633685-640813 Phaseolus vulgaris
Phvul.008G006800 0.5kb upstream 0.5kb upstream 500 false Chr08: 640314-640813 Phaseolus vulgaris
Phvul.008G006800 0.5kb downstream 0.5kb downstream 7129 true Chr08: 633185-640313 Phaseolus vulgaris
Phvul.008G006800 0.5kb downstream 0.5kb downstream 500 false Chr08: 633185-633684 Phaseolus vulgaris
Phvul.008G006800 1.0kb upstream 1.0kb upstream 7629 true Chr08: 633685-641313 Phaseolus vulgaris
Phvul.008G006800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 640314-641313 Phaseolus vulgaris
Phvul.008G006800 1.0kb downstream 1.0kb downstream 7629 true Chr08: 632685-640313 Phaseolus vulgaris
Phvul.008G006800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 632685-633684 Phaseolus vulgaris
Phvul.008G006800 2.0kb upstream 2.0kb upstream 8629 true Chr08: 633685-642313 Phaseolus vulgaris
Phvul.008G006800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 640314-642313 Phaseolus vulgaris
Phvul.008G006800 2.0kb downstream 2.0kb downstream 8629 true Chr08: 631685-640313 Phaseolus vulgaris
Phvul.008G006800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 631685-633684 Phaseolus vulgaris
Phvul.008G006800 5.0kb upstream 5.0kb upstream 11629 true Chr08: 633685-645313 Phaseolus vulgaris
Phvul.008G006800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 640314-645313 Phaseolus vulgaris
Phvul.008G006800 5.0kb downstream 5.0kb downstream 11629 true Chr08: 628685-640313 Phaseolus vulgaris
Phvul.008G006800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 628685-633684 Phaseolus vulgaris
Phvul.008G006800 10.0kb upstream 10.0kb upstream 16629 true Chr08: 633685-650313 Phaseolus vulgaris
Phvul.008G006800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 640314-650313 Phaseolus vulgaris
Phvul.008G006800 10.0kb downstream 10.0kb downstream 16629 true Chr08: 623685-640313 Phaseolus vulgaris
Phvul.008G006800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 623685-633684 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300632 5265 Fabidae View MSA
124069460 5270 Rosid View MSA
123741946 5271 Pentapetalae View MSA
122794414 5272 Eudicot View MSA
122048731 5273 Angiosperm View MSA
121348301 5274 Embryophyte View MSA
123425749 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 12.9544 0.0 33.7687    
cufflinks 22.5477 0.0 58.3192   High
cufflinks 11.7094 0.0 30.6319   Low
cufflinks 13.4947 0.0 35.1909    
cufflinks 19.2385 0.0 49.7473    
cufflinks 10.7072 0.0 28.1618   Low
cufflinks 18.9923 0.0 49.0932    
cufflinks 17.7133 0.0 45.8016    
cufflinks 22.4003 0.0 57.9347   High
cufflinks 21.6417 0.0 55.9547    
cufflinks 18.6275 0.0 48.1705    

0 Strain