Gene : Phvul.009G260200 P. vulgaris v2.1
Defline:  (1 of 3) K08908 - light-harvesting complex I chlorophyll a/b binding protein 2 (LHCA2) Genomic Order:  2661
Name:  ? Phvul.009G260200 Secondary Identifier:  ? PAC:37151249
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G260200 0.5kb upstream 0.5kb upstream 2177 true Chr09: 38045106-38047282 Phaseolus vulgaris
Phvul.009G260200 0.5kb upstream 0.5kb upstream 500 false Chr09: 38046783-38047282 Phaseolus vulgaris
Phvul.009G260200 0.5kb downstream 0.5kb downstream 2177 true Chr09: 38044606-38046782 Phaseolus vulgaris
Phvul.009G260200 0.5kb downstream 0.5kb downstream 500 false Chr09: 38044606-38045105 Phaseolus vulgaris
Phvul.009G260200 1.0kb upstream 1.0kb upstream 2677 true Chr09: 38045106-38047782 Phaseolus vulgaris
Phvul.009G260200 1.0kb upstream 1.0kb upstream 1000 false Chr09: 38046783-38047782 Phaseolus vulgaris
Phvul.009G260200 1.0kb downstream 1.0kb downstream 2677 true Chr09: 38044106-38046782 Phaseolus vulgaris
Phvul.009G260200 1.0kb downstream 1.0kb downstream 1000 false Chr09: 38044106-38045105 Phaseolus vulgaris
Phvul.009G260200 2.0kb upstream 2.0kb upstream 3677 true Chr09: 38045106-38048782 Phaseolus vulgaris
Phvul.009G260200 2.0kb upstream 2.0kb upstream 2000 false Chr09: 38046783-38048782 Phaseolus vulgaris
Phvul.009G260200 2.0kb downstream 2.0kb downstream 3677 true Chr09: 38043106-38046782 Phaseolus vulgaris
Phvul.009G260200 2.0kb downstream 2.0kb downstream 2000 false Chr09: 38043106-38045105 Phaseolus vulgaris
Phvul.009G260200 5.0kb upstream 5.0kb upstream 6677 true Chr09: 38045106-38051782 Phaseolus vulgaris
Phvul.009G260200 5.0kb upstream 5.0kb upstream 5000 false Chr09: 38046783-38051782 Phaseolus vulgaris
Phvul.009G260200 5.0kb downstream 5.0kb downstream 6677 true Chr09: 38040106-38046782 Phaseolus vulgaris
Phvul.009G260200 5.0kb downstream 5.0kb downstream 5000 false Chr09: 38040106-38045105 Phaseolus vulgaris
Phvul.009G260200 10.0kb upstream 10.0kb upstream 11677 true Chr09: 38045106-38056782 Phaseolus vulgaris
Phvul.009G260200 10.0kb upstream 10.0kb upstream 10000 false Chr09: 38046783-38056782 Phaseolus vulgaris
Phvul.009G260200 10.0kb downstream 10.0kb downstream 11677 true Chr09: 38035106-38046782 Phaseolus vulgaris
Phvul.009G260200 10.0kb downstream 10.0kb downstream 10000 false Chr09: 38035106-38045105 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309685 5265 Fabidae View MSA
124065144 5270 Rosid View MSA
123742469 5271 Pentapetalae View MSA
122790167 5272 Eudicot View MSA
122046380 5273 Angiosperm View MSA
121344826 5274 Embryophyte View MSA
123425939 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 122.141 0.0 466.478 High  
cufflinks 204.934 0.0 893.819 High  
cufflinks 1006.42 0.0 8309.89 High High
cufflinks 115.908 0.0 373.145 High  
cufflinks 122.015 0.0 459.058 High  
cufflinks 242.174 0.0 960.838 High  
cufflinks 1.25387 0.0 5.12724   Low
cufflinks 0.580944 0.0 2.73216   Low
cufflinks 0.952495 0.0 4.15803   Low
cufflinks 112.508 0.0 421.062 High  
cufflinks 97.0375 0.0 349.724 High  

0 Strain