Gene : Phvul.009G257800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11516:SF25 - PYRUVATE DEHYDROGENASE E1 COMPONENT SUBUNIT ALPHA-3, CHLOROPLASTIC Genomic Order:  2637
Name:  ? Phvul.009G257800 Secondary Identifier:  ? PAC:37151513
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Sequence Feature Displayer

Ontology Annotation Displayer

3 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5173 Phaseolus vulgaris pathologic  
Pvulgaris PWY-5464 Phaseolus vulgaris pathologic  
Pvulgaris PYRUVDEHYD-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G257800 0.5kb upstream 0.5kb upstream 3782 true Chr09: 37807363-37811144 Phaseolus vulgaris
Phvul.009G257800 0.5kb upstream 0.5kb upstream 500 false Chr09: 37807363-37807862 Phaseolus vulgaris
Phvul.009G257800 0.5kb downstream 0.5kb downstream 3782 true Chr09: 37807863-37811644 Phaseolus vulgaris
Phvul.009G257800 0.5kb downstream 0.5kb downstream 500 false Chr09: 37811145-37811644 Phaseolus vulgaris
Phvul.009G257800 1.0kb upstream 1.0kb upstream 4282 true Chr09: 37806863-37811144 Phaseolus vulgaris
Phvul.009G257800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 37806863-37807862 Phaseolus vulgaris
Phvul.009G257800 1.0kb downstream 1.0kb downstream 4282 true Chr09: 37807863-37812144 Phaseolus vulgaris
Phvul.009G257800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 37811145-37812144 Phaseolus vulgaris
Phvul.009G257800 2.0kb upstream 2.0kb upstream 5282 true Chr09: 37805863-37811144 Phaseolus vulgaris
Phvul.009G257800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 37805863-37807862 Phaseolus vulgaris
Phvul.009G257800 2.0kb downstream 2.0kb downstream 5282 true Chr09: 37807863-37813144 Phaseolus vulgaris
Phvul.009G257800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 37811145-37813144 Phaseolus vulgaris
Phvul.009G257800 5.0kb upstream 5.0kb upstream 8282 true Chr09: 37802863-37811144 Phaseolus vulgaris
Phvul.009G257800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 37802863-37807862 Phaseolus vulgaris
Phvul.009G257800 5.0kb downstream 5.0kb downstream 8282 true Chr09: 37807863-37816144 Phaseolus vulgaris
Phvul.009G257800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 37811145-37816144 Phaseolus vulgaris
Phvul.009G257800 10.0kb upstream 10.0kb upstream 13282 true Chr09: 37797863-37811144 Phaseolus vulgaris
Phvul.009G257800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 37797863-37807862 Phaseolus vulgaris
Phvul.009G257800 10.0kb downstream 10.0kb downstream 13282 true Chr09: 37807863-37821144 Phaseolus vulgaris
Phvul.009G257800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 37811145-37821144 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309169 5265 Fabidae View MSA
124066481 5270 Rosid View MSA
123745685 5271 Pentapetalae View MSA
122791580 5272 Eudicot View MSA
122044804 5273 Angiosperm View MSA
121347425 5274 Embryophyte View MSA
123423942 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.86651 0.0 16.3817    
cufflinks 9.15086 0.0 24.5988    
cufflinks 6.21595 0.0 17.2629    
cufflinks 13.2954 0.0 34.9751   High
cufflinks 7.08528 0.0 19.5522    
cufflinks 7.57827 0.0 20.6711    
cufflinks 6.39553 0.0 17.675    
cufflinks 7.43369 0.0 20.281    
cufflinks 7.956 0.0 21.6255    
cufflinks 4.40104 0.0 12.6791   Low
cufflinks 7.44184 0.0 20.4211    

0 Strain