Gene : Phvul.009G259500 P. vulgaris v2.1
Defline:  (1 of 18) K13066 - caffeic acid 3-O-methyltransferase (E2.1.1.68, COMT) Genomic Order:  2655
Name:  ? Phvul.009G259500 Secondary Identifier:  ? PAC:37149485
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1121 Phaseolus vulgaris pathologic  
Pvulgaris PWY-2181 Phaseolus vulgaris pathologic  
Pvulgaris PWY-361 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7186 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G259500 0.5kb upstream 0.5kb upstream 3589 true Chr09: 37948247-37951835 Phaseolus vulgaris
Phvul.009G259500 0.5kb upstream 0.5kb upstream 500 false Chr09: 37951336-37951835 Phaseolus vulgaris
Phvul.009G259500 0.5kb downstream 0.5kb downstream 3589 true Chr09: 37947747-37951335 Phaseolus vulgaris
Phvul.009G259500 0.5kb downstream 0.5kb downstream 500 false Chr09: 37947747-37948246 Phaseolus vulgaris
Phvul.009G259500 1.0kb upstream 1.0kb upstream 4089 true Chr09: 37948247-37952335 Phaseolus vulgaris
Phvul.009G259500 1.0kb upstream 1.0kb upstream 1000 false Chr09: 37951336-37952335 Phaseolus vulgaris
Phvul.009G259500 1.0kb downstream 1.0kb downstream 4089 true Chr09: 37947247-37951335 Phaseolus vulgaris
Phvul.009G259500 1.0kb downstream 1.0kb downstream 1000 false Chr09: 37947247-37948246 Phaseolus vulgaris
Phvul.009G259500 2.0kb upstream 2.0kb upstream 5089 true Chr09: 37948247-37953335 Phaseolus vulgaris
Phvul.009G259500 2.0kb upstream 2.0kb upstream 2000 false Chr09: 37951336-37953335 Phaseolus vulgaris
Phvul.009G259500 2.0kb downstream 2.0kb downstream 5089 true Chr09: 37946247-37951335 Phaseolus vulgaris
Phvul.009G259500 2.0kb downstream 2.0kb downstream 2000 false Chr09: 37946247-37948246 Phaseolus vulgaris
Phvul.009G259500 5.0kb upstream 5.0kb upstream 8089 true Chr09: 37948247-37956335 Phaseolus vulgaris
Phvul.009G259500 5.0kb upstream 5.0kb upstream 5000 false Chr09: 37951336-37956335 Phaseolus vulgaris
Phvul.009G259500 5.0kb downstream 5.0kb downstream 8089 true Chr09: 37943247-37951335 Phaseolus vulgaris
Phvul.009G259500 5.0kb downstream 5.0kb downstream 5000 false Chr09: 37943247-37948246 Phaseolus vulgaris
Phvul.009G259500 10.0kb upstream 10.0kb upstream 13089 true Chr09: 37948247-37961335 Phaseolus vulgaris
Phvul.009G259500 10.0kb upstream 10.0kb upstream 10000 false Chr09: 37951336-37961335 Phaseolus vulgaris
Phvul.009G259500 10.0kb downstream 10.0kb downstream 13089 true Chr09: 37938247-37951335 Phaseolus vulgaris
Phvul.009G259500 10.0kb downstream 10.0kb downstream 10000 false Chr09: 37938247-37948246 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031356 5273 Angiosperm View MSA
122311268 5265 Fabidae View MSA
124070059 5270 Rosid View MSA
123750385 5271 Pentapetalae View MSA
122795177 5272 Eudicot View MSA
123429068 5275 Viridiplantae View MSA
121350689 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 3.0356 0.0 9.52639    
cufflinks 3.66671 0.0 11.2711    
cufflinks 2.60916 0.0 8.30198    
cufflinks 4.65854 0.0 14.0057    
cufflinks 12.4534 0.0 33.9857    
cufflinks 3.70092 0.0 11.3499    
cufflinks 39.7103 0.0 102.722 High High
cufflinks 17.4221 0.0 45.9818    
cufflinks 50.1473 0.0 130.298 High High
cufflinks 0.178386 0.0 0.73286 Low Low
cufflinks 11.5597 0.0 31.6699    

0 Strain