Gene : Phvul.009G258800 P. vulgaris v2.1
Defline:  (1 of 18) K13066 - caffeic acid 3-O-methyltransferase (E2.1.1.68, COMT) Genomic Order:  2647
Name:  ? Phvul.009G258800 Secondary Identifier:  ? PAC:37151314
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1121 Phaseolus vulgaris pathologic  
Pvulgaris PWY-2181 Phaseolus vulgaris pathologic  
Pvulgaris PWY-361 Phaseolus vulgaris pathologic  
Pvulgaris PWY-7186 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G258800 0.5kb upstream 0.5kb upstream 2299 true Chr09: 37875771-37878069 Phaseolus vulgaris
Phvul.009G258800 0.5kb upstream 0.5kb upstream 500 false Chr09: 37877570-37878069 Phaseolus vulgaris
Phvul.009G258800 0.5kb downstream 0.5kb downstream 2299 true Chr09: 37875271-37877569 Phaseolus vulgaris
Phvul.009G258800 0.5kb downstream 0.5kb downstream 500 false Chr09: 37875271-37875770 Phaseolus vulgaris
Phvul.009G258800 1.0kb upstream 1.0kb upstream 2799 true Chr09: 37875771-37878569 Phaseolus vulgaris
Phvul.009G258800 1.0kb upstream 1.0kb upstream 1000 false Chr09: 37877570-37878569 Phaseolus vulgaris
Phvul.009G258800 1.0kb downstream 1.0kb downstream 2799 true Chr09: 37874771-37877569 Phaseolus vulgaris
Phvul.009G258800 1.0kb downstream 1.0kb downstream 1000 false Chr09: 37874771-37875770 Phaseolus vulgaris
Phvul.009G258800 2.0kb upstream 2.0kb upstream 3799 true Chr09: 37875771-37879569 Phaseolus vulgaris
Phvul.009G258800 2.0kb upstream 2.0kb upstream 2000 false Chr09: 37877570-37879569 Phaseolus vulgaris
Phvul.009G258800 2.0kb downstream 2.0kb downstream 3799 true Chr09: 37873771-37877569 Phaseolus vulgaris
Phvul.009G258800 2.0kb downstream 2.0kb downstream 2000 false Chr09: 37873771-37875770 Phaseolus vulgaris
Phvul.009G258800 5.0kb upstream 5.0kb upstream 6799 true Chr09: 37875771-37882569 Phaseolus vulgaris
Phvul.009G258800 5.0kb upstream 5.0kb upstream 5000 false Chr09: 37877570-37882569 Phaseolus vulgaris
Phvul.009G258800 5.0kb downstream 5.0kb downstream 6799 true Chr09: 37870771-37877569 Phaseolus vulgaris
Phvul.009G258800 5.0kb downstream 5.0kb downstream 5000 false Chr09: 37870771-37875770 Phaseolus vulgaris
Phvul.009G258800 10.0kb upstream 10.0kb upstream 11799 true Chr09: 37875771-37887569 Phaseolus vulgaris
Phvul.009G258800 10.0kb upstream 10.0kb upstream 10000 false Chr09: 37877570-37887569 Phaseolus vulgaris
Phvul.009G258800 10.0kb downstream 10.0kb downstream 11799 true Chr09: 37865771-37877569 Phaseolus vulgaris
Phvul.009G258800 10.0kb downstream 10.0kb downstream 10000 false Chr09: 37865771-37875770 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122031356 5273 Angiosperm View MSA
122311268 5265 Fabidae View MSA
124070059 5270 Rosid View MSA
123750385 5271 Pentapetalae View MSA
122795177 5272 Eudicot View MSA
123429068 5275 Viridiplantae View MSA
121350689 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.318821 0.0 1.25999 Low  
cufflinks 0.188992 0.0 0.778455 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.110277 0.0 0.478211 Low Low
cufflinks 2.80031 0.0 9.04752    
cufflinks 0.816862 0.0 2.99093    
cufflinks 16.5306 0.0 44.2399   High
cufflinks 3.40216 0.0 10.6674    
cufflinks 63.1869 0.0 164.783 High High
cufflinks 0.0306261 0.0 0.151171 Low Low
cufflinks 3.21166 0.0 10.2068    

0 Strain