Gene : Phvul.009G250400 P. vulgaris v2.1
Defline:  (1 of 9) K19041 - E3 ubiquitin-protein ligase RNF38/44 [EC:6.3.2.19] (RNF38_44) Genomic Order:  2562
Name:  ? Phvul.009G250400 Secondary Identifier:  ? PAC:37151157
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G250400 0.5kb upstream 0.5kb upstream 1830 true Chr09: 37109935-37111764 Phaseolus vulgaris
Phvul.009G250400 0.5kb upstream 0.5kb upstream 500 false Chr09: 37109935-37110434 Phaseolus vulgaris
Phvul.009G250400 0.5kb downstream 0.5kb downstream 1830 true Chr09: 37110435-37112264 Phaseolus vulgaris
Phvul.009G250400 0.5kb downstream 0.5kb downstream 500 false Chr09: 37111765-37112264 Phaseolus vulgaris
Phvul.009G250400 1.0kb upstream 1.0kb upstream 2330 true Chr09: 37109435-37111764 Phaseolus vulgaris
Phvul.009G250400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 37109435-37110434 Phaseolus vulgaris
Phvul.009G250400 1.0kb downstream 1.0kb downstream 2330 true Chr09: 37110435-37112764 Phaseolus vulgaris
Phvul.009G250400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 37111765-37112764 Phaseolus vulgaris
Phvul.009G250400 2.0kb upstream 2.0kb upstream 3330 true Chr09: 37108435-37111764 Phaseolus vulgaris
Phvul.009G250400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 37108435-37110434 Phaseolus vulgaris
Phvul.009G250400 2.0kb downstream 2.0kb downstream 3330 true Chr09: 37110435-37113764 Phaseolus vulgaris
Phvul.009G250400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 37111765-37113764 Phaseolus vulgaris
Phvul.009G250400 5.0kb upstream 5.0kb upstream 6330 true Chr09: 37105435-37111764 Phaseolus vulgaris
Phvul.009G250400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 37105435-37110434 Phaseolus vulgaris
Phvul.009G250400 5.0kb downstream 5.0kb downstream 6330 true Chr09: 37110435-37116764 Phaseolus vulgaris
Phvul.009G250400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 37111765-37116764 Phaseolus vulgaris
Phvul.009G250400 10.0kb upstream 10.0kb upstream 11330 true Chr09: 37100435-37111764 Phaseolus vulgaris
Phvul.009G250400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 37100435-37110434 Phaseolus vulgaris
Phvul.009G250400 10.0kb downstream 10.0kb downstream 11330 true Chr09: 37110435-37121764 Phaseolus vulgaris
Phvul.009G250400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 37111765-37121764 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306119 5265 Fabidae View MSA
124069328 5270 Rosid View MSA
123753111 5271 Pentapetalae View MSA
122797850 5272 Eudicot View MSA
122051603 5273 Angiosperm View MSA
123429130 5275 Viridiplantae View MSA
121351603 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.8627 0.0 49.4027    
cufflinks 8.02709 0.0 22.509    
cufflinks 6.64894 0.0 19.1199   Low
cufflinks 7.81319 0.0 21.7364    
cufflinks 12.3051 0.0 32.9703    
cufflinks 8.47262 0.0 23.6751    
cufflinks 65.1836 0.0 173.62 High High
cufflinks 44.7138 0.0 116.096 High High
cufflinks 11.903 0.0 32.0105    
cufflinks 70.762 0.0 188.47 High High
cufflinks 12.1767 0.0 32.636    

0 Strain