Gene : Phvul.009G239400 P. vulgaris v2.1
Defline:  (1 of 2) K12115 - clock-associated PAS protein ZTL (ZTL) Genomic Order:  2442
Name:  ? Phvul.009G239400 Secondary Identifier:  ? PAC:37151068
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G239400 0.5kb upstream 0.5kb upstream 7682 true Chr09: 35833030-35840711 Phaseolus vulgaris
Phvul.009G239400 0.5kb upstream 0.5kb upstream 500 false Chr09: 35833030-35833529 Phaseolus vulgaris
Phvul.009G239400 0.5kb downstream 0.5kb downstream 7682 true Chr09: 35833530-35841211 Phaseolus vulgaris
Phvul.009G239400 0.5kb downstream 0.5kb downstream 500 false Chr09: 35840712-35841211 Phaseolus vulgaris
Phvul.009G239400 1.0kb upstream 1.0kb upstream 8182 true Chr09: 35832530-35840711 Phaseolus vulgaris
Phvul.009G239400 1.0kb upstream 1.0kb upstream 1000 false Chr09: 35832530-35833529 Phaseolus vulgaris
Phvul.009G239400 1.0kb downstream 1.0kb downstream 8182 true Chr09: 35833530-35841711 Phaseolus vulgaris
Phvul.009G239400 1.0kb downstream 1.0kb downstream 1000 false Chr09: 35840712-35841711 Phaseolus vulgaris
Phvul.009G239400 2.0kb upstream 2.0kb upstream 9182 true Chr09: 35831530-35840711 Phaseolus vulgaris
Phvul.009G239400 2.0kb upstream 2.0kb upstream 2000 false Chr09: 35831530-35833529 Phaseolus vulgaris
Phvul.009G239400 2.0kb downstream 2.0kb downstream 9182 true Chr09: 35833530-35842711 Phaseolus vulgaris
Phvul.009G239400 2.0kb downstream 2.0kb downstream 2000 false Chr09: 35840712-35842711 Phaseolus vulgaris
Phvul.009G239400 5.0kb upstream 5.0kb upstream 12182 true Chr09: 35828530-35840711 Phaseolus vulgaris
Phvul.009G239400 5.0kb upstream 5.0kb upstream 5000 false Chr09: 35828530-35833529 Phaseolus vulgaris
Phvul.009G239400 5.0kb downstream 5.0kb downstream 12182 true Chr09: 35833530-35845711 Phaseolus vulgaris
Phvul.009G239400 5.0kb downstream 5.0kb downstream 5000 false Chr09: 35840712-35845711 Phaseolus vulgaris
Phvul.009G239400 10.0kb upstream 10.0kb upstream 17182 true Chr09: 35823530-35840711 Phaseolus vulgaris
Phvul.009G239400 10.0kb upstream 10.0kb upstream 10000 false Chr09: 35823530-35833529 Phaseolus vulgaris
Phvul.009G239400 10.0kb downstream 10.0kb downstream 17182 true Chr09: 35833530-35850711 Phaseolus vulgaris
Phvul.009G239400 10.0kb downstream 10.0kb downstream 10000 false Chr09: 35840712-35850711 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309494 5265 Fabidae View MSA
124068680 5270 Rosid View MSA
123751990 5271 Pentapetalae View MSA
122789390 5272 Eudicot View MSA
122047758 5273 Angiosperm View MSA
121310788 5274 Embryophyte View MSA
123428379 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 22.5274 0.0 83.5998    
cufflinks 23.8724 0.0 87.5775    
cufflinks 22.8862 0.0 84.1837    
cufflinks 26.8261 0.0 87.2025    
cufflinks 20.3923 0.0 65.2894    
cufflinks 24.3343 0.0 89.9663    
cufflinks 12.0558 0.0 39.1357   Low
cufflinks 11.3634 0.0 42.5232   Low
cufflinks 15.0961 0.0 55.8895    
cufflinks 27.2966 0.0 106.499   High
cufflinks 21.6087 0.0 79.6308    

0 Strain