Gene : Phvul.009G231300 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12919:SF20 - 28S RIBOSOMAL PROTEIN S16, MITOCHONDRIAL Genomic Order:  2362
Name:  ? Phvul.009G231300 Secondary Identifier:  ? PAC:37149353
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.009G231300 0.5kb upstream 0.5kb upstream 1958 true Chr09: 34720061-34722018 Phaseolus vulgaris
Phvul.009G231300 0.5kb upstream 0.5kb upstream 500 false Chr09: 34720061-34720560 Phaseolus vulgaris
Phvul.009G231300 0.5kb downstream 0.5kb downstream 1958 true Chr09: 34720561-34722518 Phaseolus vulgaris
Phvul.009G231300 0.5kb downstream 0.5kb downstream 500 false Chr09: 34722019-34722518 Phaseolus vulgaris
Phvul.009G231300 1.0kb upstream 1.0kb upstream 2458 true Chr09: 34719561-34722018 Phaseolus vulgaris
Phvul.009G231300 1.0kb upstream 1.0kb upstream 1000 false Chr09: 34719561-34720560 Phaseolus vulgaris
Phvul.009G231300 1.0kb downstream 1.0kb downstream 2458 true Chr09: 34720561-34723018 Phaseolus vulgaris
Phvul.009G231300 1.0kb downstream 1.0kb downstream 1000 false Chr09: 34722019-34723018 Phaseolus vulgaris
Phvul.009G231300 2.0kb upstream 2.0kb upstream 3458 true Chr09: 34718561-34722018 Phaseolus vulgaris
Phvul.009G231300 2.0kb upstream 2.0kb upstream 2000 false Chr09: 34718561-34720560 Phaseolus vulgaris
Phvul.009G231300 2.0kb downstream 2.0kb downstream 3458 true Chr09: 34720561-34724018 Phaseolus vulgaris
Phvul.009G231300 2.0kb downstream 2.0kb downstream 2000 false Chr09: 34722019-34724018 Phaseolus vulgaris
Phvul.009G231300 5.0kb upstream 5.0kb upstream 6458 true Chr09: 34715561-34722018 Phaseolus vulgaris
Phvul.009G231300 5.0kb upstream 5.0kb upstream 5000 false Chr09: 34715561-34720560 Phaseolus vulgaris
Phvul.009G231300 5.0kb downstream 5.0kb downstream 6458 true Chr09: 34720561-34727018 Phaseolus vulgaris
Phvul.009G231300 5.0kb downstream 5.0kb downstream 5000 false Chr09: 34722019-34727018 Phaseolus vulgaris
Phvul.009G231300 10.0kb upstream 10.0kb upstream 11458 true Chr09: 34710561-34722018 Phaseolus vulgaris
Phvul.009G231300 10.0kb upstream 10.0kb upstream 10000 false Chr09: 34710561-34720560 Phaseolus vulgaris
Phvul.009G231300 10.0kb downstream 10.0kb downstream 11458 true Chr09: 34720561-34732018 Phaseolus vulgaris
Phvul.009G231300 10.0kb downstream 10.0kb downstream 10000 false Chr09: 34722019-34732018 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299837 5265 Fabidae View MSA
124065829 5270 Rosid View MSA
123738502 5271 Pentapetalae View MSA
122792819 5272 Eudicot View MSA
122051162 5273 Angiosperm View MSA
121348917 5274 Embryophyte View MSA
123426601 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.5943 0.0 75.1554    
cufflinks 39.1167 0.0 101.526 High High
cufflinks 16.971 0.0 46.4258   Low
cufflinks 52.5518 0.0 135.85 High High
cufflinks 28.3661 0.0 74.745    
cufflinks 15.426 0.0 42.5419   Low
cufflinks 16.8996 0.0 46.1554   Low
cufflinks 25.1334 0.0 66.5122    
cufflinks 23.0381 0.0 61.4781    
cufflinks 26.8324 0.0 70.9055    
cufflinks 31.0704 0.0 81.4243    

0 Strain