Gene : Phvul.008G113800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR33101:SF1 - ROP GUANINE NUCLEOTIDE EXCHANGE FACTOR 7 Genomic Order:  1116
Name:  ? Phvul.008G113800 Secondary Identifier:  ? PAC:37157800
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G113800 0.5kb upstream 0.5kb upstream 4665 true Chr08: 13249456-13254120 Phaseolus vulgaris
Phvul.008G113800 0.5kb upstream 0.5kb upstream 500 false Chr08: 13249456-13249955 Phaseolus vulgaris
Phvul.008G113800 0.5kb downstream 0.5kb downstream 4665 true Chr08: 13249956-13254620 Phaseolus vulgaris
Phvul.008G113800 0.5kb downstream 0.5kb downstream 500 false Chr08: 13254121-13254620 Phaseolus vulgaris
Phvul.008G113800 1.0kb upstream 1.0kb upstream 5165 true Chr08: 13248956-13254120 Phaseolus vulgaris
Phvul.008G113800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 13248956-13249955 Phaseolus vulgaris
Phvul.008G113800 1.0kb downstream 1.0kb downstream 5165 true Chr08: 13249956-13255120 Phaseolus vulgaris
Phvul.008G113800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 13254121-13255120 Phaseolus vulgaris
Phvul.008G113800 2.0kb upstream 2.0kb upstream 6165 true Chr08: 13247956-13254120 Phaseolus vulgaris
Phvul.008G113800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 13247956-13249955 Phaseolus vulgaris
Phvul.008G113800 2.0kb downstream 2.0kb downstream 6165 true Chr08: 13249956-13256120 Phaseolus vulgaris
Phvul.008G113800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 13254121-13256120 Phaseolus vulgaris
Phvul.008G113800 5.0kb upstream 5.0kb upstream 9165 true Chr08: 13244956-13254120 Phaseolus vulgaris
Phvul.008G113800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 13244956-13249955 Phaseolus vulgaris
Phvul.008G113800 5.0kb downstream 5.0kb downstream 9165 true Chr08: 13249956-13259120 Phaseolus vulgaris
Phvul.008G113800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 13254121-13259120 Phaseolus vulgaris
Phvul.008G113800 10.0kb upstream 10.0kb upstream 14165 true Chr08: 13239956-13254120 Phaseolus vulgaris
Phvul.008G113800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 13239956-13249955 Phaseolus vulgaris
Phvul.008G113800 10.0kb downstream 10.0kb downstream 14165 true Chr08: 13249956-13264120 Phaseolus vulgaris
Phvul.008G113800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 13254121-13264120 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302567 5265 Fabidae View MSA
124060526 5270 Rosid View MSA
123746088 5271 Pentapetalae View MSA
122792106 5272 Eudicot View MSA
122045104 5273 Angiosperm View MSA
121349126 5274 Embryophyte View MSA
123381182 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 5.71359 0.0 15.5634    
cufflinks 8.56947 0.0 22.6343    
cufflinks 9.11317 0.0 23.9482   High
cufflinks 1.99803 0.0 6.08504   Low
cufflinks 4.45856 0.0 12.4492    
cufflinks 12.5097 0.0 32.4678   High
cufflinks 3.31506 0.0 9.45342    
cufflinks 2.92442 0.0 8.44343   Low
cufflinks 3.87636 0.0 10.9165    
cufflinks 5.72107 0.0 15.6045    
cufflinks 5.04414 0.0 13.9087    

0 Strain