Gene : Phvul.008G119000 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11709:SF62 - LACCASE-2 Genomic Order:  1169
Name:  ? Phvul.008G119000 Secondary Identifier:  ? PAC:37159117
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5466 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6824 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G119000 0.5kb upstream 0.5kb upstream 3560 true Chr08: 14661405-14664964 Phaseolus vulgaris
Phvul.008G119000 0.5kb upstream 0.5kb upstream 500 false Chr08: 14661405-14661904 Phaseolus vulgaris
Phvul.008G119000 0.5kb downstream 0.5kb downstream 3560 true Chr08: 14661905-14665464 Phaseolus vulgaris
Phvul.008G119000 0.5kb downstream 0.5kb downstream 500 false Chr08: 14664965-14665464 Phaseolus vulgaris
Phvul.008G119000 1.0kb upstream 1.0kb upstream 4060 true Chr08: 14660905-14664964 Phaseolus vulgaris
Phvul.008G119000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 14660905-14661904 Phaseolus vulgaris
Phvul.008G119000 1.0kb downstream 1.0kb downstream 4060 true Chr08: 14661905-14665964 Phaseolus vulgaris
Phvul.008G119000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 14664965-14665964 Phaseolus vulgaris
Phvul.008G119000 2.0kb upstream 2.0kb upstream 5060 true Chr08: 14659905-14664964 Phaseolus vulgaris
Phvul.008G119000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 14659905-14661904 Phaseolus vulgaris
Phvul.008G119000 2.0kb downstream 2.0kb downstream 5060 true Chr08: 14661905-14666964 Phaseolus vulgaris
Phvul.008G119000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 14664965-14666964 Phaseolus vulgaris
Phvul.008G119000 5.0kb upstream 5.0kb upstream 8060 true Chr08: 14656905-14664964 Phaseolus vulgaris
Phvul.008G119000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 14656905-14661904 Phaseolus vulgaris
Phvul.008G119000 5.0kb downstream 5.0kb downstream 8060 true Chr08: 14661905-14669964 Phaseolus vulgaris
Phvul.008G119000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 14664965-14669964 Phaseolus vulgaris
Phvul.008G119000 10.0kb upstream 10.0kb upstream 13060 true Chr08: 14651905-14664964 Phaseolus vulgaris
Phvul.008G119000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 14651905-14661904 Phaseolus vulgaris
Phvul.008G119000 10.0kb downstream 10.0kb downstream 13060 true Chr08: 14661905-14674964 Phaseolus vulgaris
Phvul.008G119000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 14664965-14674964 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301895 5265 Fabidae View MSA
124070693 5270 Rosid View MSA
123751220 5271 Pentapetalae View MSA
122795105 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.691739 0.0 2.44611    
cufflinks 2.50103 0.0 7.63321    
cufflinks 1.09025 0.0 3.67326    
cufflinks 36.0701 0.0 93.9609 High High
cufflinks 1.5115 0.0 4.89801    
cufflinks 18.862 0.0 48.8233    
cufflinks 3.23884 0.0 9.58884    
cufflinks 9.79139 0.0 26.1249    
cufflinks 0.0356229 0.0 0.163362 Low Low
cufflinks 44.5588 0.0 117.28 High High

0 Strain