Gene : Phvul.008G104500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31503:SF1 - VACUOLAR CATION/PROTON EXCHANGER 1-RELATED Genomic Order:  1023
Name:  ? Phvul.008G104500 Secondary Identifier:  ? PAC:37157872
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G104500 0.5kb upstream 0.5kb upstream 4391 true Chr08: 11469799-11474189 Phaseolus vulgaris
Phvul.008G104500 0.5kb upstream 0.5kb upstream 500 false Chr08: 11469799-11470298 Phaseolus vulgaris
Phvul.008G104500 0.5kb downstream 0.5kb downstream 4391 true Chr08: 11470299-11474689 Phaseolus vulgaris
Phvul.008G104500 0.5kb downstream 0.5kb downstream 500 false Chr08: 11474190-11474689 Phaseolus vulgaris
Phvul.008G104500 1.0kb upstream 1.0kb upstream 4891 true Chr08: 11469299-11474189 Phaseolus vulgaris
Phvul.008G104500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 11469299-11470298 Phaseolus vulgaris
Phvul.008G104500 1.0kb downstream 1.0kb downstream 4891 true Chr08: 11470299-11475189 Phaseolus vulgaris
Phvul.008G104500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 11474190-11475189 Phaseolus vulgaris
Phvul.008G104500 2.0kb upstream 2.0kb upstream 5891 true Chr08: 11468299-11474189 Phaseolus vulgaris
Phvul.008G104500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 11468299-11470298 Phaseolus vulgaris
Phvul.008G104500 2.0kb downstream 2.0kb downstream 5891 true Chr08: 11470299-11476189 Phaseolus vulgaris
Phvul.008G104500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 11474190-11476189 Phaseolus vulgaris
Phvul.008G104500 5.0kb upstream 5.0kb upstream 8891 true Chr08: 11465299-11474189 Phaseolus vulgaris
Phvul.008G104500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 11465299-11470298 Phaseolus vulgaris
Phvul.008G104500 5.0kb downstream 5.0kb downstream 8891 true Chr08: 11470299-11479189 Phaseolus vulgaris
Phvul.008G104500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 11474190-11479189 Phaseolus vulgaris
Phvul.008G104500 10.0kb upstream 10.0kb upstream 13891 true Chr08: 11460299-11474189 Phaseolus vulgaris
Phvul.008G104500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 11460299-11470298 Phaseolus vulgaris
Phvul.008G104500 10.0kb downstream 10.0kb downstream 13891 true Chr08: 11470299-11484189 Phaseolus vulgaris
Phvul.008G104500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 11474190-11484189 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122299639 5265 Fabidae View MSA
124065189 5270 Rosid View MSA
123739014 5271 Pentapetalae View MSA
122792056 5272 Eudicot View MSA
122048075 5273 Angiosperm View MSA
121310844 5274 Embryophyte View MSA
123427763 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 468.016 0.0 1733.44 High High
cufflinks 323.295 0.0 1096.36 High  
cufflinks 366.218 0.0 1285.67 High  
cufflinks 217.365 0.0 676.25 High  
cufflinks 198.608 0.0 610.683 High  
cufflinks 136.773 0.0 399.92 High  
cufflinks 13.2794 0.0 35.0779   Low
cufflinks 5.29838 0.0 15.0882   Low
cufflinks 24.4895 0.0 63.317    
cufflinks 92.5171 0.0 257.938 High  
cufflinks 125.636 0.0 360.906 High  

0 Strain