Gene : Phvul.008G090000 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12902:SF12 - PROTEIN SCAR2-RELATED Genomic Order:  912
Name:  ? Phvul.008G090000 Secondary Identifier:  ? PAC:37159199
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G090000 0.5kb upstream 0.5kb upstream 7363 true Chr08: 9050462-9057824 Phaseolus vulgaris
Phvul.008G090000 0.5kb upstream 0.5kb upstream 500 false Chr08: 9050462-9050961 Phaseolus vulgaris
Phvul.008G090000 0.5kb downstream 0.5kb downstream 7363 true Chr08: 9050962-9058324 Phaseolus vulgaris
Phvul.008G090000 0.5kb downstream 0.5kb downstream 500 false Chr08: 9057825-9058324 Phaseolus vulgaris
Phvul.008G090000 1.0kb upstream 1.0kb upstream 7863 true Chr08: 9049962-9057824 Phaseolus vulgaris
Phvul.008G090000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 9049962-9050961 Phaseolus vulgaris
Phvul.008G090000 1.0kb downstream 1.0kb downstream 7863 true Chr08: 9050962-9058824 Phaseolus vulgaris
Phvul.008G090000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 9057825-9058824 Phaseolus vulgaris
Phvul.008G090000 2.0kb upstream 2.0kb upstream 8863 true Chr08: 9048962-9057824 Phaseolus vulgaris
Phvul.008G090000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 9048962-9050961 Phaseolus vulgaris
Phvul.008G090000 2.0kb downstream 2.0kb downstream 8863 true Chr08: 9050962-9059824 Phaseolus vulgaris
Phvul.008G090000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 9057825-9059824 Phaseolus vulgaris
Phvul.008G090000 5.0kb upstream 5.0kb upstream 11863 true Chr08: 9045962-9057824 Phaseolus vulgaris
Phvul.008G090000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 9045962-9050961 Phaseolus vulgaris
Phvul.008G090000 5.0kb downstream 5.0kb downstream 11863 true Chr08: 9050962-9062824 Phaseolus vulgaris
Phvul.008G090000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 9057825-9062824 Phaseolus vulgaris
Phvul.008G090000 10.0kb upstream 10.0kb upstream 16863 true Chr08: 9040962-9057824 Phaseolus vulgaris
Phvul.008G090000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 9040962-9050961 Phaseolus vulgaris
Phvul.008G090000 10.0kb downstream 10.0kb downstream 16863 true Chr08: 9050962-9067824 Phaseolus vulgaris
Phvul.008G090000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 9057825-9067824 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313394 5265 Fabidae View MSA
124065878 5270 Rosid View MSA
123743804 5271 Pentapetalae View MSA
122797754 5272 Eudicot View MSA
122043443 5273 Angiosperm View MSA
121351143 5274 Embryophyte View MSA
123382024 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.286071 0.0 1.23579 Low Low
cufflinks 1.49524 0.0 5.38184    
cufflinks 2.69747 0.0 8.55846    
cufflinks 0.470028 0.0 1.81863 Low Low
cufflinks 6.09504 0.0 17.4537    
cufflinks 6.34893 0.0 18.0364    
cufflinks 4.58445 0.0 15.6812    
cufflinks 1.23793 0.0 4.59135    
cufflinks 3.49393 0.0 10.7192    
cufflinks 1.09156 0.0 6.23456    
cufflinks 8.10605 0.0 26.2824   High

0 Strain