Gene : Phvul.008G100400 P. vulgaris v2.1
Defline:  (1 of 2) PTHR11709:SF66 - LACCASE-17 Genomic Order:  1202
Name:  ? Phvul.008G100400 Secondary Identifier:  ? PAC:37160835
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-5466 Phaseolus vulgaris pathologic  
Pvulgaris PWY-6824 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G100400 0.5kb upstream 0.5kb upstream 3013 true Chr08: 16001509-16004521 Phaseolus vulgaris
Phvul.008G100400 0.5kb upstream 0.5kb upstream 500 false Chr08: 16004022-16004521 Phaseolus vulgaris
Phvul.008G100400 0.5kb downstream 0.5kb downstream 3013 true Chr08: 16001009-16004021 Phaseolus vulgaris
Phvul.008G100400 0.5kb downstream 0.5kb downstream 500 false Chr08: 16001009-16001508 Phaseolus vulgaris
Phvul.008G100400 1.0kb upstream 1.0kb upstream 3513 true Chr08: 16001509-16005021 Phaseolus vulgaris
Phvul.008G100400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 16004022-16005021 Phaseolus vulgaris
Phvul.008G100400 1.0kb downstream 1.0kb downstream 3513 true Chr08: 16000509-16004021 Phaseolus vulgaris
Phvul.008G100400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 16000509-16001508 Phaseolus vulgaris
Phvul.008G100400 2.0kb upstream 2.0kb upstream 4513 true Chr08: 16001509-16006021 Phaseolus vulgaris
Phvul.008G100400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 16004022-16006021 Phaseolus vulgaris
Phvul.008G100400 2.0kb downstream 2.0kb downstream 4513 true Chr08: 15999509-16004021 Phaseolus vulgaris
Phvul.008G100400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 15999509-16001508 Phaseolus vulgaris
Phvul.008G100400 5.0kb upstream 5.0kb upstream 7513 true Chr08: 16001509-16009021 Phaseolus vulgaris
Phvul.008G100400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 16004022-16009021 Phaseolus vulgaris
Phvul.008G100400 5.0kb downstream 5.0kb downstream 7513 true Chr08: 15996509-16004021 Phaseolus vulgaris
Phvul.008G100400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 15996509-16001508 Phaseolus vulgaris
Phvul.008G100400 10.0kb upstream 10.0kb upstream 12513 true Chr08: 16001509-16014021 Phaseolus vulgaris
Phvul.008G100400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 16004022-16014021 Phaseolus vulgaris
Phvul.008G100400 10.0kb downstream 10.0kb downstream 12513 true Chr08: 15991509-16004021 Phaseolus vulgaris
Phvul.008G100400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 15991509-16001508 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313591 5265 Fabidae View MSA
124062715 5270 Rosid View MSA
123751220 5271 Pentapetalae View MSA
122795105 5272 Eudicot View MSA
122050716 5273 Angiosperm View MSA
121350155 5274 Embryophyte View MSA
123428014 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.22719 0.0 0.891821 Low Low
cufflinks 0.458372 0.0 1.69993 Low  
cufflinks 7.42545 0.0 20.4557   High
cufflinks 1.61732 0.0 5.26798    
cufflinks 9.07461 0.0 24.6822   High
cufflinks 9.78616 0.0 26.38   High
cufflinks 0.845365 0.0 2.95524    
cufflinks 0.362682 0.0 1.36828 Low Low
cufflinks 4.01851 0.0 11.777    
cufflinks 0.467399 0.0 1.73353    
cufflinks 5.3138 0.0 15.2068    

0 Strain