Gene : Phvul.008G220200 P. vulgaris v2.1
Defline:  (1 of 2) PTHR10555//PTHR10555:SF155 - SORTING NEXIN // SUBFAMILY NOT NAMED Genomic Order:  2241
Name:  ? Phvul.008G220200 Secondary Identifier:  ? PAC:37158316
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Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G220200 0.5kb upstream 0.5kb upstream 8154 true Chr08: 56917668-56925821 Phaseolus vulgaris
Phvul.008G220200 0.5kb upstream 0.5kb upstream 500 false Chr08: 56925322-56925821 Phaseolus vulgaris
Phvul.008G220200 0.5kb downstream 0.5kb downstream 8154 true Chr08: 56917168-56925321 Phaseolus vulgaris
Phvul.008G220200 0.5kb downstream 0.5kb downstream 500 false Chr08: 56917168-56917667 Phaseolus vulgaris
Phvul.008G220200 1.0kb upstream 1.0kb upstream 8654 true Chr08: 56917668-56926321 Phaseolus vulgaris
Phvul.008G220200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 56925322-56926321 Phaseolus vulgaris
Phvul.008G220200 1.0kb downstream 1.0kb downstream 8654 true Chr08: 56916668-56925321 Phaseolus vulgaris
Phvul.008G220200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 56916668-56917667 Phaseolus vulgaris
Phvul.008G220200 2.0kb upstream 2.0kb upstream 9654 true Chr08: 56917668-56927321 Phaseolus vulgaris
Phvul.008G220200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 56925322-56927321 Phaseolus vulgaris
Phvul.008G220200 2.0kb downstream 2.0kb downstream 9654 true Chr08: 56915668-56925321 Phaseolus vulgaris
Phvul.008G220200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 56915668-56917667 Phaseolus vulgaris
Phvul.008G220200 5.0kb upstream 5.0kb upstream 12654 true Chr08: 56917668-56930321 Phaseolus vulgaris
Phvul.008G220200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 56925322-56930321 Phaseolus vulgaris
Phvul.008G220200 5.0kb downstream 5.0kb downstream 12654 true Chr08: 56912668-56925321 Phaseolus vulgaris
Phvul.008G220200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 56912668-56917667 Phaseolus vulgaris
Phvul.008G220200 10.0kb upstream 10.0kb upstream 17654 true Chr08: 56917668-56935321 Phaseolus vulgaris
Phvul.008G220200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 56925322-56935321 Phaseolus vulgaris
Phvul.008G220200 10.0kb downstream 10.0kb downstream 17654 true Chr08: 56907668-56925321 Phaseolus vulgaris
Phvul.008G220200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 56907668-56917667 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041026 5273 Angiosperm View MSA
122302228 5265 Fabidae View MSA
124036661 5270 Rosid View MSA
123749355 5271 Pentapetalae View MSA
122789384 5272 Eudicot View MSA
121345182 5274 Embryophyte View MSA
123428162 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 11.7966 0.0 30.6259   Low
cufflinks 21.6378 0.0 56.1505    
cufflinks 11.0139 0.0 28.72   Low
cufflinks 19.8297 0.0 51.363    
cufflinks 16.6619 0.0 43.0755    
cufflinks 10.6189 0.0 27.6703   Low
cufflinks 17.962 0.0 46.4999    
cufflinks 18.1989 0.0 47.0698    
cufflinks 17.9513 0.0 46.4654    
cufflinks 24.0926 0.0 62.7382   High
cufflinks 22.395 0.0 58.2546    

0 Strain