Gene : Phvul.008G066200 P. vulgaris v2.1
Defline:  (1 of 1) K12590 - exosome complex component RRP46 (RRP46, EXOSC5) Genomic Order:  685
Name:  ? Phvul.008G066200 Secondary Identifier:  ? PAC:37160854
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G066200 0.5kb upstream 0.5kb upstream 6219 true Chr08: 6052874-6059092 Phaseolus vulgaris
Phvul.008G066200 0.5kb upstream 0.5kb upstream 500 false Chr08: 6058593-6059092 Phaseolus vulgaris
Phvul.008G066200 0.5kb downstream 0.5kb downstream 6219 true Chr08: 6052374-6058592 Phaseolus vulgaris
Phvul.008G066200 0.5kb downstream 0.5kb downstream 500 false Chr08: 6052374-6052873 Phaseolus vulgaris
Phvul.008G066200 1.0kb upstream 1.0kb upstream 6719 true Chr08: 6052874-6059592 Phaseolus vulgaris
Phvul.008G066200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6058593-6059592 Phaseolus vulgaris
Phvul.008G066200 1.0kb downstream 1.0kb downstream 6719 true Chr08: 6051874-6058592 Phaseolus vulgaris
Phvul.008G066200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6051874-6052873 Phaseolus vulgaris
Phvul.008G066200 2.0kb upstream 2.0kb upstream 7719 true Chr08: 6052874-6060592 Phaseolus vulgaris
Phvul.008G066200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6058593-6060592 Phaseolus vulgaris
Phvul.008G066200 2.0kb downstream 2.0kb downstream 7719 true Chr08: 6050874-6058592 Phaseolus vulgaris
Phvul.008G066200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6050874-6052873 Phaseolus vulgaris
Phvul.008G066200 5.0kb upstream 5.0kb upstream 10719 true Chr08: 6052874-6063592 Phaseolus vulgaris
Phvul.008G066200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6058593-6063592 Phaseolus vulgaris
Phvul.008G066200 5.0kb downstream 5.0kb downstream 10719 true Chr08: 6047874-6058592 Phaseolus vulgaris
Phvul.008G066200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6047874-6052873 Phaseolus vulgaris
Phvul.008G066200 10.0kb upstream 10.0kb upstream 15719 true Chr08: 6052874-6068592 Phaseolus vulgaris
Phvul.008G066200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6058593-6068592 Phaseolus vulgaris
Phvul.008G066200 10.0kb downstream 10.0kb downstream 15719 true Chr08: 6042874-6058592 Phaseolus vulgaris
Phvul.008G066200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6042874-6052873 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122308372 5265 Fabidae View MSA
124063163 5270 Rosid View MSA
123740282 5271 Pentapetalae View MSA
122793891 5272 Eudicot View MSA
122042132 5273 Angiosperm View MSA
121346708 5274 Embryophyte View MSA
123426253 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 8.68652 0.0 24.4802    
cufflinks 9.7047 0.0 27.1335    
cufflinks 5.55993 0.0 16.3709   Low
cufflinks 8.564 0.0 24.4109    
cufflinks 7.73 0.0 22.1816    
cufflinks 4.34988 0.0 13.2223   Low
cufflinks 8.93235 0.0 25.1464    
cufflinks 8.80422 0.0 24.6936    
cufflinks 10.3469 0.0 28.8256   High
cufflinks 7.54457 0.0 21.636    
cufflinks 7.012 0.0 20.3355    

0 Strain