Gene : Phvul.008G065900 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31500:SF10 - AT HOOK MOTIF DNA-BINDING FAMILY PROTEIN Genomic Order:  682
Name:  ? Phvul.008G065900 Secondary Identifier:  ? PAC:37161512
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G065900 0.5kb upstream 0.5kb upstream 7216 true Chr08: 6037183-6044398 Phaseolus vulgaris
Phvul.008G065900 0.5kb upstream 0.5kb upstream 500 false Chr08: 6037183-6037682 Phaseolus vulgaris
Phvul.008G065900 0.5kb downstream 0.5kb downstream 7216 true Chr08: 6037683-6044898 Phaseolus vulgaris
Phvul.008G065900 0.5kb downstream 0.5kb downstream 500 false Chr08: 6044399-6044898 Phaseolus vulgaris
Phvul.008G065900 1.0kb upstream 1.0kb upstream 7716 true Chr08: 6036683-6044398 Phaseolus vulgaris
Phvul.008G065900 1.0kb upstream 1.0kb upstream 1000 false Chr08: 6036683-6037682 Phaseolus vulgaris
Phvul.008G065900 1.0kb downstream 1.0kb downstream 7716 true Chr08: 6037683-6045398 Phaseolus vulgaris
Phvul.008G065900 1.0kb downstream 1.0kb downstream 1000 false Chr08: 6044399-6045398 Phaseolus vulgaris
Phvul.008G065900 2.0kb upstream 2.0kb upstream 8716 true Chr08: 6035683-6044398 Phaseolus vulgaris
Phvul.008G065900 2.0kb upstream 2.0kb upstream 2000 false Chr08: 6035683-6037682 Phaseolus vulgaris
Phvul.008G065900 2.0kb downstream 2.0kb downstream 8716 true Chr08: 6037683-6046398 Phaseolus vulgaris
Phvul.008G065900 2.0kb downstream 2.0kb downstream 2000 false Chr08: 6044399-6046398 Phaseolus vulgaris
Phvul.008G065900 5.0kb upstream 5.0kb upstream 11716 true Chr08: 6032683-6044398 Phaseolus vulgaris
Phvul.008G065900 5.0kb upstream 5.0kb upstream 5000 false Chr08: 6032683-6037682 Phaseolus vulgaris
Phvul.008G065900 5.0kb downstream 5.0kb downstream 11716 true Chr08: 6037683-6049398 Phaseolus vulgaris
Phvul.008G065900 5.0kb downstream 5.0kb downstream 5000 false Chr08: 6044399-6049398 Phaseolus vulgaris
Phvul.008G065900 10.0kb upstream 10.0kb upstream 16716 true Chr08: 6027683-6044398 Phaseolus vulgaris
Phvul.008G065900 10.0kb upstream 10.0kb upstream 10000 false Chr08: 6027683-6037682 Phaseolus vulgaris
Phvul.008G065900 10.0kb downstream 10.0kb downstream 16716 true Chr08: 6037683-6054398 Phaseolus vulgaris
Phvul.008G065900 10.0kb downstream 10.0kb downstream 10000 false Chr08: 6044399-6054398 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122041209 5273 Angiosperm View MSA
122311157 5265 Fabidae View MSA
124064168 5270 Rosid View MSA
123741988 5271 Pentapetalae View MSA
122789787 5272 Eudicot View MSA
121348420 5274 Embryophyte View MSA
123380859 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 25.587 0.0 66.3714    
cufflinks 30.462 0.0 79.4713    
cufflinks 108.043 0.0 317.251 High High
cufflinks 23.5928 0.0 61.0277    
cufflinks 45.176 0.0 120.266 High  
cufflinks 55.4822 0.0 150.853 High  
cufflinks 3.20022 0.0 9.31703   Low
cufflinks 1.0712 0.0 3.52128   Low
cufflinks 1.86988 0.0 5.80377   Low
cufflinks 15.14 0.0 39.2511    
cufflinks 42.7782 0.0 113.635 High  

0 Strain