Gene : Phvul.008G054400 P. vulgaris v2.1
Defline:  (1 of 1) K02699 - photosystem I subunit XI (psaL) Genomic Order:  565
Name:  ? Phvul.008G054400 Secondary Identifier:  ? PAC:37159832
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Sequence Feature Displayer

Ontology Annotation Displayer

2 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PHOTOALL-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-101 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G054400 0.5kb upstream 0.5kb upstream 1742 true Chr08: 4858928-4860669 Phaseolus vulgaris
Phvul.008G054400 0.5kb upstream 0.5kb upstream 500 false Chr08: 4858928-4859427 Phaseolus vulgaris
Phvul.008G054400 0.5kb downstream 0.5kb downstream 1742 true Chr08: 4859428-4861169 Phaseolus vulgaris
Phvul.008G054400 0.5kb downstream 0.5kb downstream 500 false Chr08: 4860670-4861169 Phaseolus vulgaris
Phvul.008G054400 1.0kb upstream 1.0kb upstream 2242 true Chr08: 4858428-4860669 Phaseolus vulgaris
Phvul.008G054400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4858428-4859427 Phaseolus vulgaris
Phvul.008G054400 1.0kb downstream 1.0kb downstream 2242 true Chr08: 4859428-4861669 Phaseolus vulgaris
Phvul.008G054400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4860670-4861669 Phaseolus vulgaris
Phvul.008G054400 2.0kb upstream 2.0kb upstream 3242 true Chr08: 4857428-4860669 Phaseolus vulgaris
Phvul.008G054400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4857428-4859427 Phaseolus vulgaris
Phvul.008G054400 2.0kb downstream 2.0kb downstream 3242 true Chr08: 4859428-4862669 Phaseolus vulgaris
Phvul.008G054400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4860670-4862669 Phaseolus vulgaris
Phvul.008G054400 5.0kb upstream 5.0kb upstream 6242 true Chr08: 4854428-4860669 Phaseolus vulgaris
Phvul.008G054400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4854428-4859427 Phaseolus vulgaris
Phvul.008G054400 5.0kb downstream 5.0kb downstream 6242 true Chr08: 4859428-4865669 Phaseolus vulgaris
Phvul.008G054400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4860670-4865669 Phaseolus vulgaris
Phvul.008G054400 10.0kb upstream 10.0kb upstream 11242 true Chr08: 4849428-4860669 Phaseolus vulgaris
Phvul.008G054400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4849428-4859427 Phaseolus vulgaris
Phvul.008G054400 10.0kb downstream 10.0kb downstream 11242 true Chr08: 4859428-4870669 Phaseolus vulgaris
Phvul.008G054400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4860670-4870669 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040995 5273 Angiosperm View MSA
122306566 5265 Fabidae View MSA
124061167 5270 Rosid View MSA
123750401 5271 Pentapetalae View MSA
122793402 5272 Eudicot View MSA
121343870 5274 Embryophyte View MSA
123424325 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 369.786 0.0 1141.85 High  
cufflinks 692.038 0.0 2428.16 High  
cufflinks 5480.19 0.0 33524.3 High High
cufflinks 382.507 0.0 1220.45 High  
cufflinks 715.102 0.0 2554.82 High  
cufflinks 1586.08 0.0 6899.51 High  
cufflinks 1.6667 0.0 5.73087   Low
cufflinks 0.919999 0.0 3.3791   Low
cufflinks 6.69947 0.0 19.6682   Low
cufflinks 389.156 0.0 1216.51 High  
cufflinks 445.325 0.0 1437.7 High  

0 Strain