Gene : Phvul.008G054800 P. vulgaris v2.1
Defline:  (1 of 2) PTHR12506//PTHR12506:SF25 - PROTEIN PHOSPHATASE RELATED // SUBFAMILY NOT NAMED Genomic Order:  569
Name:  ? Phvul.008G054800 Secondary Identifier:  ? PAC:37157815
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G054800 0.5kb upstream 0.5kb upstream 8674 true Chr08: 4881654-4890327 Phaseolus vulgaris
Phvul.008G054800 0.5kb upstream 0.5kb upstream 500 false Chr08: 4881654-4882153 Phaseolus vulgaris
Phvul.008G054800 0.5kb downstream 0.5kb downstream 8674 true Chr08: 4882154-4890827 Phaseolus vulgaris
Phvul.008G054800 0.5kb downstream 0.5kb downstream 500 false Chr08: 4890328-4890827 Phaseolus vulgaris
Phvul.008G054800 1.0kb upstream 1.0kb upstream 9174 true Chr08: 4881154-4890327 Phaseolus vulgaris
Phvul.008G054800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4881154-4882153 Phaseolus vulgaris
Phvul.008G054800 1.0kb downstream 1.0kb downstream 9174 true Chr08: 4882154-4891327 Phaseolus vulgaris
Phvul.008G054800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4890328-4891327 Phaseolus vulgaris
Phvul.008G054800 2.0kb upstream 2.0kb upstream 10174 true Chr08: 4880154-4890327 Phaseolus vulgaris
Phvul.008G054800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4880154-4882153 Phaseolus vulgaris
Phvul.008G054800 2.0kb downstream 2.0kb downstream 10174 true Chr08: 4882154-4892327 Phaseolus vulgaris
Phvul.008G054800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4890328-4892327 Phaseolus vulgaris
Phvul.008G054800 5.0kb upstream 5.0kb upstream 13174 true Chr08: 4877154-4890327 Phaseolus vulgaris
Phvul.008G054800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4877154-4882153 Phaseolus vulgaris
Phvul.008G054800 5.0kb downstream 5.0kb downstream 13174 true Chr08: 4882154-4895327 Phaseolus vulgaris
Phvul.008G054800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4890328-4895327 Phaseolus vulgaris
Phvul.008G054800 10.0kb upstream 10.0kb upstream 18174 true Chr08: 4872154-4890327 Phaseolus vulgaris
Phvul.008G054800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4872154-4882153 Phaseolus vulgaris
Phvul.008G054800 10.0kb downstream 10.0kb downstream 18174 true Chr08: 4882154-4900327 Phaseolus vulgaris
Phvul.008G054800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4890328-4900327 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122301689 5265 Fabidae View MSA
124062485 5270 Rosid View MSA
123742436 5271 Pentapetalae View MSA
122788272 5272 Eudicot View MSA
122047416 5273 Angiosperm View MSA
121348027 5274 Embryophyte View MSA
123428726 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 17.547 0.0 56.5506    
cufflinks 8.99941 0.0 31.9   Low
cufflinks 72.8865 0.0 259.164 High High
cufflinks 14.4138 0.0 47.4813    
cufflinks 25.5638 0.0 80.9624    
cufflinks 21.9822 0.0 69.646    
cufflinks 17.1519 0.0 55.1951    
cufflinks 16.241 0.0 52.4385    
cufflinks 14.8081 0.0 48.543    
cufflinks 23.9023 0.0 75.7763    
cufflinks 22.8981 0.0 72.6816    

0 Strain