Gene : Phvul.008G054700 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12608:SF4 - GDT1-LIKE PROTEIN 3 Genomic Order:  568
Name:  ? Phvul.008G054700 Secondary Identifier:  ? PAC:37161208
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G054700 0.5kb upstream 0.5kb upstream 4228 true Chr08: 4871558-4875785 Phaseolus vulgaris
Phvul.008G054700 0.5kb upstream 0.5kb upstream 500 false Chr08: 4875286-4875785 Phaseolus vulgaris
Phvul.008G054700 0.5kb downstream 0.5kb downstream 4228 true Chr08: 4871058-4875285 Phaseolus vulgaris
Phvul.008G054700 0.5kb downstream 0.5kb downstream 500 false Chr08: 4871058-4871557 Phaseolus vulgaris
Phvul.008G054700 1.0kb upstream 1.0kb upstream 4728 true Chr08: 4871558-4876285 Phaseolus vulgaris
Phvul.008G054700 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4875286-4876285 Phaseolus vulgaris
Phvul.008G054700 1.0kb downstream 1.0kb downstream 4728 true Chr08: 4870558-4875285 Phaseolus vulgaris
Phvul.008G054700 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4870558-4871557 Phaseolus vulgaris
Phvul.008G054700 2.0kb upstream 2.0kb upstream 5728 true Chr08: 4871558-4877285 Phaseolus vulgaris
Phvul.008G054700 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4875286-4877285 Phaseolus vulgaris
Phvul.008G054700 2.0kb downstream 2.0kb downstream 5728 true Chr08: 4869558-4875285 Phaseolus vulgaris
Phvul.008G054700 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4869558-4871557 Phaseolus vulgaris
Phvul.008G054700 5.0kb upstream 5.0kb upstream 8728 true Chr08: 4871558-4880285 Phaseolus vulgaris
Phvul.008G054700 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4875286-4880285 Phaseolus vulgaris
Phvul.008G054700 5.0kb downstream 5.0kb downstream 8728 true Chr08: 4866558-4875285 Phaseolus vulgaris
Phvul.008G054700 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4866558-4871557 Phaseolus vulgaris
Phvul.008G054700 10.0kb upstream 10.0kb upstream 13728 true Chr08: 4871558-4885285 Phaseolus vulgaris
Phvul.008G054700 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4875286-4885285 Phaseolus vulgaris
Phvul.008G054700 10.0kb downstream 10.0kb downstream 13728 true Chr08: 4861558-4875285 Phaseolus vulgaris
Phvul.008G054700 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4861558-4871557 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300578 5265 Fabidae View MSA
124066638 5270 Rosid View MSA
123740452 5271 Pentapetalae View MSA
122788674 5272 Eudicot View MSA
122047998 5273 Angiosperm View MSA
121345967 5274 Embryophyte View MSA
123428725 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 16.447 0.0 43.642   Low
cufflinks 28.9381 0.0 74.9669    
cufflinks 45.1165 0.0 116.855 High  
cufflinks 46.3541 0.0 120.122 High  
cufflinks 46.5211 0.0 120.543 High  
cufflinks 41.87 0.0 108.317 High  
cufflinks 45.096 0.0 116.822 High  
cufflinks 44.7481 0.0 115.98 High  
cufflinks 50.284 0.0 130.484 High  
cufflinks 21.5822 0.0 56.3929   Low
cufflinks 64.9477 0.0 170.424 High High

0 Strain