Gene : Phvul.008G057500 P. vulgaris v2.1
Defline:  (1 of 1) KOG4185 - Predicted E3 ubiquitin ligase Genomic Order:  595
Name:  ? Phvul.008G057500 Secondary Identifier:  ? PAC:37158030
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G057500 0.5kb upstream 0.5kb upstream 10583 true Chr08: 5102341-5112923 Phaseolus vulgaris
Phvul.008G057500 0.5kb upstream 0.5kb upstream 500 false Chr08: 5112424-5112923 Phaseolus vulgaris
Phvul.008G057500 0.5kb downstream 0.5kb downstream 10583 true Chr08: 5101841-5112423 Phaseolus vulgaris
Phvul.008G057500 0.5kb downstream 0.5kb downstream 500 false Chr08: 5101841-5102340 Phaseolus vulgaris
Phvul.008G057500 1.0kb upstream 1.0kb upstream 11083 true Chr08: 5102341-5113423 Phaseolus vulgaris
Phvul.008G057500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 5112424-5113423 Phaseolus vulgaris
Phvul.008G057500 1.0kb downstream 1.0kb downstream 11083 true Chr08: 5101341-5112423 Phaseolus vulgaris
Phvul.008G057500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 5101341-5102340 Phaseolus vulgaris
Phvul.008G057500 2.0kb upstream 2.0kb upstream 12083 true Chr08: 5102341-5114423 Phaseolus vulgaris
Phvul.008G057500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 5112424-5114423 Phaseolus vulgaris
Phvul.008G057500 2.0kb downstream 2.0kb downstream 12083 true Chr08: 5100341-5112423 Phaseolus vulgaris
Phvul.008G057500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 5100341-5102340 Phaseolus vulgaris
Phvul.008G057500 5.0kb upstream 5.0kb upstream 15083 true Chr08: 5102341-5117423 Phaseolus vulgaris
Phvul.008G057500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 5112424-5117423 Phaseolus vulgaris
Phvul.008G057500 5.0kb downstream 5.0kb downstream 15083 true Chr08: 5097341-5112423 Phaseolus vulgaris
Phvul.008G057500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 5097341-5102340 Phaseolus vulgaris
Phvul.008G057500 10.0kb upstream 10.0kb upstream 20083 true Chr08: 5102341-5122423 Phaseolus vulgaris
Phvul.008G057500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 5112424-5122423 Phaseolus vulgaris
Phvul.008G057500 10.0kb downstream 10.0kb downstream 20083 true Chr08: 5092341-5112423 Phaseolus vulgaris
Phvul.008G057500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 5092341-5102340 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122040868 5273 Angiosperm View MSA
122311582 5265 Fabidae View MSA
124068904 5270 Rosid View MSA
123737854 5271 Pentapetalae View MSA
122792904 5272 Eudicot View MSA
121351125 5274 Embryophyte View MSA
123428161 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.64034 0.0 10.1651   Low
cufflinks 2.72774 0.0 11.4163    
cufflinks 4.11474 0.0 17.3005    
cufflinks 1.11682 0.0 3.97196   Low
cufflinks 2.66886 0.0 12.0819    
cufflinks 3.86576 0.0 16.7731    
cufflinks 5.18907 0.0 18.6644   High
cufflinks 5.1663 0.0 20.3995   High
cufflinks 3.45467 0.0 13.4952    
cufflinks 4.64778 0.0 23.8104    
cufflinks 2.65604 0.0 11.6389    

0 Strain