Gene : Phvul.008G058100 P. vulgaris v2.1
Defline:  (1 of 1) PTHR12358:SF43 - SPHINGOID LONG-CHAIN BASES KINASE 2, MITOCHONDRIAL Genomic Order:  601
Name:  ? Phvul.008G058100 Secondary Identifier:  ? PAC:37159282
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7039 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G058100 0.5kb upstream 0.5kb upstream 4550 true Chr08: 5159613-5164162 Phaseolus vulgaris
Phvul.008G058100 0.5kb upstream 0.5kb upstream 500 false Chr08: 5163663-5164162 Phaseolus vulgaris
Phvul.008G058100 0.5kb downstream 0.5kb downstream 4550 true Chr08: 5159113-5163662 Phaseolus vulgaris
Phvul.008G058100 0.5kb downstream 0.5kb downstream 500 false Chr08: 5159113-5159612 Phaseolus vulgaris
Phvul.008G058100 1.0kb upstream 1.0kb upstream 5050 true Chr08: 5159613-5164662 Phaseolus vulgaris
Phvul.008G058100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 5163663-5164662 Phaseolus vulgaris
Phvul.008G058100 1.0kb downstream 1.0kb downstream 5050 true Chr08: 5158613-5163662 Phaseolus vulgaris
Phvul.008G058100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 5158613-5159612 Phaseolus vulgaris
Phvul.008G058100 2.0kb upstream 2.0kb upstream 6050 true Chr08: 5159613-5165662 Phaseolus vulgaris
Phvul.008G058100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 5163663-5165662 Phaseolus vulgaris
Phvul.008G058100 2.0kb downstream 2.0kb downstream 6050 true Chr08: 5157613-5163662 Phaseolus vulgaris
Phvul.008G058100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 5157613-5159612 Phaseolus vulgaris
Phvul.008G058100 5.0kb upstream 5.0kb upstream 9050 true Chr08: 5159613-5168662 Phaseolus vulgaris
Phvul.008G058100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 5163663-5168662 Phaseolus vulgaris
Phvul.008G058100 5.0kb downstream 5.0kb downstream 9050 true Chr08: 5154613-5163662 Phaseolus vulgaris
Phvul.008G058100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 5154613-5159612 Phaseolus vulgaris
Phvul.008G058100 10.0kb upstream 10.0kb upstream 14050 true Chr08: 5159613-5173662 Phaseolus vulgaris
Phvul.008G058100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 5163663-5173662 Phaseolus vulgaris
Phvul.008G058100 10.0kb downstream 10.0kb downstream 14050 true Chr08: 5149613-5163662 Phaseolus vulgaris
Phvul.008G058100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 5149613-5159612 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122303667 5265 Fabidae View MSA
124062992 5270 Rosid View MSA
123747106 5271 Pentapetalae View MSA
122789016 5272 Eudicot View MSA
122043667 5273 Angiosperm View MSA
121344203 5274 Embryophyte View MSA
123380000 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 4.39187 0.0 12.7892    
cufflinks 6.29567 0.0 17.7269    
cufflinks 14.7954 0.0 38.8505   High
cufflinks 7.60771 0.0 21.2421    
cufflinks 4.64697 0.0 13.6146    
cufflinks 10.1012 0.0 27.262   High
cufflinks 3.8339 0.0 11.3598   Low
cufflinks 6.41785 0.0 17.9651    
cufflinks 4.37351 0.0 12.8397    
cufflinks 5.56038 0.0 15.8834    
cufflinks 5.35126 0.0 15.3941    

0 Strain