Gene : Phvul.008G048800 P. vulgaris v2.1
Defline:  (1 of 4) KOG2401 - Predicted MutS-related protein involved in mismatch repair Genomic Order:  504
Name:  ? Phvul.008G048800 Secondary Identifier:  ? PAC:37158365
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G048800 0.5kb upstream 0.5kb upstream 5263 true Chr08: 4261582-4266844 Phaseolus vulgaris
Phvul.008G048800 0.5kb upstream 0.5kb upstream 500 false Chr08: 4266345-4266844 Phaseolus vulgaris
Phvul.008G048800 0.5kb downstream 0.5kb downstream 5263 true Chr08: 4261082-4266344 Phaseolus vulgaris
Phvul.008G048800 0.5kb downstream 0.5kb downstream 500 false Chr08: 4261082-4261581 Phaseolus vulgaris
Phvul.008G048800 1.0kb upstream 1.0kb upstream 5763 true Chr08: 4261582-4267344 Phaseolus vulgaris
Phvul.008G048800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4266345-4267344 Phaseolus vulgaris
Phvul.008G048800 1.0kb downstream 1.0kb downstream 5763 true Chr08: 4260582-4266344 Phaseolus vulgaris
Phvul.008G048800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4260582-4261581 Phaseolus vulgaris
Phvul.008G048800 2.0kb upstream 2.0kb upstream 6763 true Chr08: 4261582-4268344 Phaseolus vulgaris
Phvul.008G048800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4266345-4268344 Phaseolus vulgaris
Phvul.008G048800 2.0kb downstream 2.0kb downstream 6763 true Chr08: 4259582-4266344 Phaseolus vulgaris
Phvul.008G048800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4259582-4261581 Phaseolus vulgaris
Phvul.008G048800 5.0kb upstream 5.0kb upstream 9763 true Chr08: 4261582-4271344 Phaseolus vulgaris
Phvul.008G048800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4266345-4271344 Phaseolus vulgaris
Phvul.008G048800 5.0kb downstream 5.0kb downstream 9763 true Chr08: 4256582-4266344 Phaseolus vulgaris
Phvul.008G048800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4256582-4261581 Phaseolus vulgaris
Phvul.008G048800 10.0kb upstream 10.0kb upstream 14763 true Chr08: 4261582-4276344 Phaseolus vulgaris
Phvul.008G048800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4266345-4276344 Phaseolus vulgaris
Phvul.008G048800 10.0kb downstream 10.0kb downstream 14763 true Chr08: 4251582-4266344 Phaseolus vulgaris
Phvul.008G048800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4251582-4261581 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122026433 5273 Angiosperm View MSA
122304355 5265 Fabidae View MSA
124066678 5270 Rosid View MSA
123738985 5271 Pentapetalae View MSA
122791579 5272 Eudicot View MSA
121344234 5274 Embryophyte View MSA
123380011 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.2755 0.0 36.9117    
cufflinks 5.95008 0.0 21.1628    
cufflinks 12.0435 0.0 42.8777   High
cufflinks 6.11236 0.0 25.2966    
cufflinks 3.78299 0.0 15.405   Low
cufflinks 7.83957 0.0 30.5755    
cufflinks 7.7699 0.0 24.8149    
cufflinks 11.3437 0.0 39.9972   High
cufflinks 6.19184 0.0 25.0459    
cufflinks 10.8382 0.0 38.4206    
cufflinks 4.18274 0.0 15.655   Low

0 Strain