Gene : Phvul.008G049000 P. vulgaris v2.1
Defline:  (1 of 1) 2.5.1.55 - 3-deoxy-8-phosphooctulonate synthase / Phospho-2-keto-3-deoxyoctonate aldolase Genomic Order:  506
Name:  ? Phvul.008G049000 Secondary Identifier:  ? PAC:37161420
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1269 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G049000 0.5kb upstream 0.5kb upstream 7881 true Chr08: 4277332-4285212 Phaseolus vulgaris
Phvul.008G049000 0.5kb upstream 0.5kb upstream 500 false Chr08: 4277332-4277831 Phaseolus vulgaris
Phvul.008G049000 0.5kb downstream 0.5kb downstream 7881 true Chr08: 4277832-4285712 Phaseolus vulgaris
Phvul.008G049000 0.5kb downstream 0.5kb downstream 500 false Chr08: 4285213-4285712 Phaseolus vulgaris
Phvul.008G049000 1.0kb upstream 1.0kb upstream 8381 true Chr08: 4276832-4285212 Phaseolus vulgaris
Phvul.008G049000 1.0kb upstream 1.0kb upstream 1000 false Chr08: 4276832-4277831 Phaseolus vulgaris
Phvul.008G049000 1.0kb downstream 1.0kb downstream 8381 true Chr08: 4277832-4286212 Phaseolus vulgaris
Phvul.008G049000 1.0kb downstream 1.0kb downstream 1000 false Chr08: 4285213-4286212 Phaseolus vulgaris
Phvul.008G049000 2.0kb upstream 2.0kb upstream 9381 true Chr08: 4275832-4285212 Phaseolus vulgaris
Phvul.008G049000 2.0kb upstream 2.0kb upstream 2000 false Chr08: 4275832-4277831 Phaseolus vulgaris
Phvul.008G049000 2.0kb downstream 2.0kb downstream 9381 true Chr08: 4277832-4287212 Phaseolus vulgaris
Phvul.008G049000 2.0kb downstream 2.0kb downstream 2000 false Chr08: 4285213-4287212 Phaseolus vulgaris
Phvul.008G049000 5.0kb upstream 5.0kb upstream 12381 true Chr08: 4272832-4285212 Phaseolus vulgaris
Phvul.008G049000 5.0kb upstream 5.0kb upstream 5000 false Chr08: 4272832-4277831 Phaseolus vulgaris
Phvul.008G049000 5.0kb downstream 5.0kb downstream 12381 true Chr08: 4277832-4290212 Phaseolus vulgaris
Phvul.008G049000 5.0kb downstream 5.0kb downstream 5000 false Chr08: 4285213-4290212 Phaseolus vulgaris
Phvul.008G049000 10.0kb upstream 10.0kb upstream 17381 true Chr08: 4267832-4285212 Phaseolus vulgaris
Phvul.008G049000 10.0kb upstream 10.0kb upstream 10000 false Chr08: 4267832-4277831 Phaseolus vulgaris
Phvul.008G049000 10.0kb downstream 10.0kb downstream 17381 true Chr08: 4277832-4295212 Phaseolus vulgaris
Phvul.008G049000 10.0kb downstream 10.0kb downstream 10000 false Chr08: 4285213-4295212 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307124 5265 Fabidae View MSA
124065016 5270 Rosid View MSA
123738710 5271 Pentapetalae View MSA
122788202 5272 Eudicot View MSA
122050140 5273 Angiosperm View MSA
121346522 5274 Embryophyte View MSA
123424720 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 13.1962 0.0 35.5779   Low
cufflinks 30.284 0.0 78.3442    
cufflinks 27.3073 0.0 70.7227    
cufflinks 43.0386 0.0 111.359 High High
cufflinks 26.2695 0.0 68.246    
cufflinks 27.1929 0.0 70.4733    
cufflinks 12.8277 0.0 34.6724   Low
cufflinks 15.8342 0.0 42.0681    
cufflinks 17.42 0.0 46.1067    
cufflinks 11.6999 0.0 31.9215   Low
cufflinks 25.3561 0.0 65.9066    

0 Strain