Gene : Phvul.008G184200 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11680:SF12 - SERINE HYDROXYMETHYLTRANSFERASE 2, MITOCHONDRIAL Genomic Order:  1853
Name:  ? Phvul.008G184200 Secondary Identifier:  ? PAC:37159347
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Sequence Feature Displayer

Ontology Annotation Displayer

4 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris GLYSYN-PWY Phaseolus vulgaris pathologic  
Pvulgaris PWY-2161 Phaseolus vulgaris pathologic  
Pvulgaris PWY-3841 Phaseolus vulgaris pathologic  
Pvulgaris SER-GLYSYN-PWY Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G184200 0.5kb upstream 0.5kb upstream 7462 true Chr08: 51949323-51956784 Phaseolus vulgaris
Phvul.008G184200 0.5kb upstream 0.5kb upstream 500 false Chr08: 51949323-51949822 Phaseolus vulgaris
Phvul.008G184200 0.5kb downstream 0.5kb downstream 7462 true Chr08: 51949823-51957284 Phaseolus vulgaris
Phvul.008G184200 0.5kb downstream 0.5kb downstream 500 false Chr08: 51956785-51957284 Phaseolus vulgaris
Phvul.008G184200 1.0kb upstream 1.0kb upstream 7962 true Chr08: 51948823-51956784 Phaseolus vulgaris
Phvul.008G184200 1.0kb upstream 1.0kb upstream 1000 false Chr08: 51948823-51949822 Phaseolus vulgaris
Phvul.008G184200 1.0kb downstream 1.0kb downstream 7962 true Chr08: 51949823-51957784 Phaseolus vulgaris
Phvul.008G184200 1.0kb downstream 1.0kb downstream 1000 false Chr08: 51956785-51957784 Phaseolus vulgaris
Phvul.008G184200 2.0kb upstream 2.0kb upstream 8962 true Chr08: 51947823-51956784 Phaseolus vulgaris
Phvul.008G184200 2.0kb upstream 2.0kb upstream 2000 false Chr08: 51947823-51949822 Phaseolus vulgaris
Phvul.008G184200 2.0kb downstream 2.0kb downstream 8962 true Chr08: 51949823-51958784 Phaseolus vulgaris
Phvul.008G184200 2.0kb downstream 2.0kb downstream 2000 false Chr08: 51956785-51958784 Phaseolus vulgaris
Phvul.008G184200 5.0kb upstream 5.0kb upstream 11962 true Chr08: 51944823-51956784 Phaseolus vulgaris
Phvul.008G184200 5.0kb upstream 5.0kb upstream 5000 false Chr08: 51944823-51949822 Phaseolus vulgaris
Phvul.008G184200 5.0kb downstream 5.0kb downstream 11962 true Chr08: 51949823-51961784 Phaseolus vulgaris
Phvul.008G184200 5.0kb downstream 5.0kb downstream 5000 false Chr08: 51956785-51961784 Phaseolus vulgaris
Phvul.008G184200 10.0kb upstream 10.0kb upstream 16962 true Chr08: 51939823-51956784 Phaseolus vulgaris
Phvul.008G184200 10.0kb upstream 10.0kb upstream 10000 false Chr08: 51939823-51949822 Phaseolus vulgaris
Phvul.008G184200 10.0kb downstream 10.0kb downstream 16962 true Chr08: 51949823-51966784 Phaseolus vulgaris
Phvul.008G184200 10.0kb downstream 10.0kb downstream 10000 false Chr08: 51956785-51966784 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314119 5265 Fabidae View MSA
124064979 5270 Rosid View MSA
123747223 5271 Pentapetalae View MSA
122789073 5272 Eudicot View MSA
122045639 5273 Angiosperm View MSA
121346714 5274 Embryophyte View MSA
123424879 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 18.103 0.0 57.699   Low
cufflinks 43.8968 0.0 145.335 High  
cufflinks 18.1905 0.0 58.3163   Low
cufflinks 51.5008 0.0 173.534 High  
cufflinks 47.2341 0.0 156.133 High  
cufflinks 31.5346 0.0 100.911    
cufflinks 42.1934 0.0 139.007 High  
cufflinks 34.3564 0.0 110.898 High  
cufflinks 41.191 0.0 135.106 High  
cufflinks 49.2792 0.0 165.484 High  
cufflinks 80.855 0.0 298.227 High High

0 Strain