Gene : Phvul.008G188400 P. vulgaris v2.1
Defline:  (1 of 1) PTHR11361:SF81 - DNA MISMATCH REPAIR PROTEIN MUTS, TYPE 2 Genomic Order:  1895
Name:  ? Phvul.008G188400 Secondary Identifier:  ? PAC:37161096
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G188400 0.5kb upstream 0.5kb upstream 17374 true Chr08: 52600798-52618171 Phaseolus vulgaris
Phvul.008G188400 0.5kb upstream 0.5kb upstream 500 false Chr08: 52617672-52618171 Phaseolus vulgaris
Phvul.008G188400 0.5kb downstream 0.5kb downstream 17374 true Chr08: 52600298-52617671 Phaseolus vulgaris
Phvul.008G188400 0.5kb downstream 0.5kb downstream 500 false Chr08: 52600298-52600797 Phaseolus vulgaris
Phvul.008G188400 1.0kb upstream 1.0kb upstream 17874 true Chr08: 52600798-52618671 Phaseolus vulgaris
Phvul.008G188400 1.0kb upstream 1.0kb upstream 1000 false Chr08: 52617672-52618671 Phaseolus vulgaris
Phvul.008G188400 1.0kb downstream 1.0kb downstream 17874 true Chr08: 52599798-52617671 Phaseolus vulgaris
Phvul.008G188400 1.0kb downstream 1.0kb downstream 1000 false Chr08: 52599798-52600797 Phaseolus vulgaris
Phvul.008G188400 2.0kb upstream 2.0kb upstream 18874 true Chr08: 52600798-52619671 Phaseolus vulgaris
Phvul.008G188400 2.0kb upstream 2.0kb upstream 2000 false Chr08: 52617672-52619671 Phaseolus vulgaris
Phvul.008G188400 2.0kb downstream 2.0kb downstream 18874 true Chr08: 52598798-52617671 Phaseolus vulgaris
Phvul.008G188400 2.0kb downstream 2.0kb downstream 2000 false Chr08: 52598798-52600797 Phaseolus vulgaris
Phvul.008G188400 5.0kb upstream 5.0kb upstream 21874 true Chr08: 52600798-52622671 Phaseolus vulgaris
Phvul.008G188400 5.0kb upstream 5.0kb upstream 5000 false Chr08: 52617672-52622671 Phaseolus vulgaris
Phvul.008G188400 5.0kb downstream 5.0kb downstream 21874 true Chr08: 52595798-52617671 Phaseolus vulgaris
Phvul.008G188400 5.0kb downstream 5.0kb downstream 5000 false Chr08: 52595798-52600797 Phaseolus vulgaris
Phvul.008G188400 10.0kb upstream 10.0kb upstream 26874 true Chr08: 52600798-52627671 Phaseolus vulgaris
Phvul.008G188400 10.0kb upstream 10.0kb upstream 10000 false Chr08: 52617672-52627671 Phaseolus vulgaris
Phvul.008G188400 10.0kb downstream 10.0kb downstream 26874 true Chr08: 52590798-52617671 Phaseolus vulgaris
Phvul.008G188400 10.0kb downstream 10.0kb downstream 10000 false Chr08: 52590798-52600797 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122306390 5265 Fabidae View MSA
124073530 5270 Rosid View MSA
123739589 5271 Pentapetalae View MSA
122790305 5272 Eudicot View MSA
122044988 5273 Angiosperm View MSA
121346721 5274 Embryophyte View MSA
123426571 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.475192 0.0 4.10477   Low
cufflinks 1.83933 0.0 7.75941    
cufflinks 8.21886 0.0 35.869   High
cufflinks 0.531727 0.0 3.07471 Low Low
cufflinks 2.10344 0.0 8.97432    
cufflinks 6.28803 0.0 26.9422   High
cufflinks 1.62854 0.0 9.74203    
cufflinks 2.32885 0.0 13.5271    
cufflinks 1.25737 0.0 8.38057    
cufflinks 5.13144 0.0 24.9324   High
cufflinks 1.44803 0.0 8.05787    

0 Strain