Gene : Phvul.008G190600 P. vulgaris v2.1
Defline:  (1 of 3) PTHR11945:SF150 - AGAMOUS-LIKE MADS-BOX PROTEIN AGL1-RELATED Genomic Order:  1916
Name:  ? Phvul.008G190600 Secondary Identifier:  ? PAC:37159002
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G190600 0.5kb upstream 0.5kb upstream 9351 true Chr08: 52994485-53003835 Phaseolus vulgaris
Phvul.008G190600 0.5kb upstream 0.5kb upstream 500 false Chr08: 52994485-52994984 Phaseolus vulgaris
Phvul.008G190600 0.5kb downstream 0.5kb downstream 9351 true Chr08: 52994985-53004335 Phaseolus vulgaris
Phvul.008G190600 0.5kb downstream 0.5kb downstream 500 false Chr08: 53003836-53004335 Phaseolus vulgaris
Phvul.008G190600 1.0kb upstream 1.0kb upstream 9851 true Chr08: 52993985-53003835 Phaseolus vulgaris
Phvul.008G190600 1.0kb upstream 1.0kb upstream 1000 false Chr08: 52993985-52994984 Phaseolus vulgaris
Phvul.008G190600 1.0kb downstream 1.0kb downstream 9851 true Chr08: 52994985-53004835 Phaseolus vulgaris
Phvul.008G190600 1.0kb downstream 1.0kb downstream 1000 false Chr08: 53003836-53004835 Phaseolus vulgaris
Phvul.008G190600 2.0kb upstream 2.0kb upstream 10851 true Chr08: 52992985-53003835 Phaseolus vulgaris
Phvul.008G190600 2.0kb upstream 2.0kb upstream 2000 false Chr08: 52992985-52994984 Phaseolus vulgaris
Phvul.008G190600 2.0kb downstream 2.0kb downstream 10851 true Chr08: 52994985-53005835 Phaseolus vulgaris
Phvul.008G190600 2.0kb downstream 2.0kb downstream 2000 false Chr08: 53003836-53005835 Phaseolus vulgaris
Phvul.008G190600 5.0kb upstream 5.0kb upstream 13851 true Chr08: 52989985-53003835 Phaseolus vulgaris
Phvul.008G190600 5.0kb upstream 5.0kb upstream 5000 false Chr08: 52989985-52994984 Phaseolus vulgaris
Phvul.008G190600 5.0kb downstream 5.0kb downstream 13851 true Chr08: 52994985-53008835 Phaseolus vulgaris
Phvul.008G190600 5.0kb downstream 5.0kb downstream 5000 false Chr08: 53003836-53008835 Phaseolus vulgaris
Phvul.008G190600 10.0kb upstream 10.0kb upstream 18851 true Chr08: 52984985-53003835 Phaseolus vulgaris
Phvul.008G190600 10.0kb upstream 10.0kb upstream 10000 false Chr08: 52984985-52994984 Phaseolus vulgaris
Phvul.008G190600 10.0kb downstream 10.0kb downstream 18851 true Chr08: 52994985-53013835 Phaseolus vulgaris
Phvul.008G190600 10.0kb downstream 10.0kb downstream 10000 false Chr08: 53003836-53013835 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122307292 5265 Fabidae View MSA
124063483 5270 Rosid View MSA
123747867 5271 Pentapetalae View MSA
122793842 5272 Eudicot View MSA
122049629 5273 Angiosperm View MSA
121350957 5274 Embryophyte View MSA
123424057 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 10.9651 0.0 37.6836    
cufflinks 72.6372 0.0 248.111 High High
cufflinks 0.0542358 0.0 0.269479 Low  
cufflinks 7.56333 0.0 26.5012    
cufflinks 0.91942 0.0 4.14383    
cufflinks 0.0411134 0.0 0.220124 Low Low
cufflinks 0.0348613 0.0 0.194338 Low Low
cufflinks 0.0902645 0.0 0.408316 Low  
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 123.463 0.0 397.192 High High
cufflinks 0.466508 0.0 2.2639 Low  

0 Strain