Gene : Phvul.008G189800 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23315:SF88 - ARM REPEAT PROTEIN Genomic Order:  1908
Name:  ? Phvul.008G189800 Secondary Identifier:  ? PAC:37161261
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-7511 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G189800 0.5kb upstream 0.5kb upstream 5476 true Chr08: 52810711-52816186 Phaseolus vulgaris
Phvul.008G189800 0.5kb upstream 0.5kb upstream 500 false Chr08: 52810711-52811210 Phaseolus vulgaris
Phvul.008G189800 0.5kb downstream 0.5kb downstream 5476 true Chr08: 52811211-52816686 Phaseolus vulgaris
Phvul.008G189800 0.5kb downstream 0.5kb downstream 500 false Chr08: 52816187-52816686 Phaseolus vulgaris
Phvul.008G189800 1.0kb upstream 1.0kb upstream 5976 true Chr08: 52810211-52816186 Phaseolus vulgaris
Phvul.008G189800 1.0kb upstream 1.0kb upstream 1000 false Chr08: 52810211-52811210 Phaseolus vulgaris
Phvul.008G189800 1.0kb downstream 1.0kb downstream 5976 true Chr08: 52811211-52817186 Phaseolus vulgaris
Phvul.008G189800 1.0kb downstream 1.0kb downstream 1000 false Chr08: 52816187-52817186 Phaseolus vulgaris
Phvul.008G189800 2.0kb upstream 2.0kb upstream 6976 true Chr08: 52809211-52816186 Phaseolus vulgaris
Phvul.008G189800 2.0kb upstream 2.0kb upstream 2000 false Chr08: 52809211-52811210 Phaseolus vulgaris
Phvul.008G189800 2.0kb downstream 2.0kb downstream 6976 true Chr08: 52811211-52818186 Phaseolus vulgaris
Phvul.008G189800 2.0kb downstream 2.0kb downstream 2000 false Chr08: 52816187-52818186 Phaseolus vulgaris
Phvul.008G189800 5.0kb upstream 5.0kb upstream 9976 true Chr08: 52806211-52816186 Phaseolus vulgaris
Phvul.008G189800 5.0kb upstream 5.0kb upstream 5000 false Chr08: 52806211-52811210 Phaseolus vulgaris
Phvul.008G189800 5.0kb downstream 5.0kb downstream 9976 true Chr08: 52811211-52821186 Phaseolus vulgaris
Phvul.008G189800 5.0kb downstream 5.0kb downstream 5000 false Chr08: 52816187-52821186 Phaseolus vulgaris
Phvul.008G189800 10.0kb upstream 10.0kb upstream 14976 true Chr08: 52801211-52816186 Phaseolus vulgaris
Phvul.008G189800 10.0kb upstream 10.0kb upstream 10000 false Chr08: 52801211-52811210 Phaseolus vulgaris
Phvul.008G189800 10.0kb downstream 10.0kb downstream 14976 true Chr08: 52811211-52826186 Phaseolus vulgaris
Phvul.008G189800 10.0kb downstream 10.0kb downstream 10000 false Chr08: 52816187-52826186 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122300706 5265 Fabidae View MSA
124062792 5270 Rosid View MSA
123747212 5271 Pentapetalae View MSA
122790234 5272 Eudicot View MSA
122044762 5273 Angiosperm View MSA
121310337 5274 Embryophyte View MSA
123347849 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 9.78586 0.0 26.7211    
cufflinks 10.3094 0.0 28.032    
cufflinks 13.4501 0.0 35.7889   High
cufflinks 12.9658 0.0 34.6089    
cufflinks 10.9571 0.0 29.7234    
cufflinks 14.3517 0.0 38.0397   High
cufflinks 7.16616 0.0 20.0643   Low
cufflinks 7.15552 0.0 20.0474   Low
cufflinks 9.98448 0.0 27.1684    
cufflinks 10.6 0.0 28.7951    
cufflinks 12.0643 0.0 32.4154    

0 Strain