Gene : Phvul.008G173500 P. vulgaris v2.1
Defline:  (1 of 1) PTHR23160:SF3 - SYNAPTONEMAL COMPLEX PROTEIN 1-RELATED Genomic Order:  1746
Name:  ? Phvul.008G173500 Secondary Identifier:  ? PAC:37159291
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0 Pathways

Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G173500 0.5kb upstream 0.5kb upstream 10807 true Chr08: 48865469-48876275 Phaseolus vulgaris
Phvul.008G173500 0.5kb upstream 0.5kb upstream 500 false Chr08: 48875776-48876275 Phaseolus vulgaris
Phvul.008G173500 0.5kb downstream 0.5kb downstream 10807 true Chr08: 48864969-48875775 Phaseolus vulgaris
Phvul.008G173500 0.5kb downstream 0.5kb downstream 500 false Chr08: 48864969-48865468 Phaseolus vulgaris
Phvul.008G173500 1.0kb upstream 1.0kb upstream 11307 true Chr08: 48865469-48876775 Phaseolus vulgaris
Phvul.008G173500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 48875776-48876775 Phaseolus vulgaris
Phvul.008G173500 1.0kb downstream 1.0kb downstream 11307 true Chr08: 48864469-48875775 Phaseolus vulgaris
Phvul.008G173500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 48864469-48865468 Phaseolus vulgaris
Phvul.008G173500 2.0kb upstream 2.0kb upstream 12307 true Chr08: 48865469-48877775 Phaseolus vulgaris
Phvul.008G173500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 48875776-48877775 Phaseolus vulgaris
Phvul.008G173500 2.0kb downstream 2.0kb downstream 12307 true Chr08: 48863469-48875775 Phaseolus vulgaris
Phvul.008G173500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 48863469-48865468 Phaseolus vulgaris
Phvul.008G173500 5.0kb upstream 5.0kb upstream 15307 true Chr08: 48865469-48880775 Phaseolus vulgaris
Phvul.008G173500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 48875776-48880775 Phaseolus vulgaris
Phvul.008G173500 5.0kb downstream 5.0kb downstream 15307 true Chr08: 48860469-48875775 Phaseolus vulgaris
Phvul.008G173500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 48860469-48865468 Phaseolus vulgaris
Phvul.008G173500 10.0kb upstream 10.0kb upstream 20307 true Chr08: 48865469-48885775 Phaseolus vulgaris
Phvul.008G173500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 48875776-48885775 Phaseolus vulgaris
Phvul.008G173500 10.0kb downstream 10.0kb downstream 20307 true Chr08: 48855469-48875775 Phaseolus vulgaris
Phvul.008G173500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 48855469-48865468 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122302115 5265 Fabidae View MSA
124068908 5270 Rosid View MSA
123737284 5271 Pentapetalae View MSA
122789700 5272 Eudicot View MSA
122042808 5273 Angiosperm View MSA
121349481 5274 Embryophyte View MSA
123381327 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.344469 0.0 2.35772 Low  
cufflinks 0.226383 0.0 2.67997 Low Low
cufflinks 0.190087 0.0 1.41246 Low Low
cufflinks 0.314537 0.0 1.99121 Low  
cufflinks 0.292076 0.0 2.17035 Low  
cufflinks 0.626066 0.0 5.42569    
cufflinks 1.05075 0.0 7.00899   High
cufflinks 0.747215 0.0 5.89467   High
cufflinks 0.408199 0.0 3.61717 Low  
cufflinks 0.622279 0.0 5.89879    
cufflinks 0.323409 0.0 3.10889 Low  

0 Strain