Gene : Phvul.008G181100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31100:SF1 - AT-HOOK MOTIF NUCLEAR LOCALIZED PROTEIN 17-RELATED Genomic Order:  1822
Name:  ? Phvul.008G181100 Secondary Identifier:  ? PAC:37159011
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Genomics

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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G181100 0.5kb upstream 0.5kb upstream 1286 true Chr08: 51225880-51227165 Phaseolus vulgaris
Phvul.008G181100 0.5kb upstream 0.5kb upstream 500 false Chr08: 51226666-51227165 Phaseolus vulgaris
Phvul.008G181100 0.5kb downstream 0.5kb downstream 1286 true Chr08: 51225380-51226665 Phaseolus vulgaris
Phvul.008G181100 0.5kb downstream 0.5kb downstream 500 false Chr08: 51225380-51225879 Phaseolus vulgaris
Phvul.008G181100 1.0kb upstream 1.0kb upstream 1786 true Chr08: 51225880-51227665 Phaseolus vulgaris
Phvul.008G181100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 51226666-51227665 Phaseolus vulgaris
Phvul.008G181100 1.0kb downstream 1.0kb downstream 1786 true Chr08: 51224880-51226665 Phaseolus vulgaris
Phvul.008G181100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 51224880-51225879 Phaseolus vulgaris
Phvul.008G181100 2.0kb upstream 2.0kb upstream 2786 true Chr08: 51225880-51228665 Phaseolus vulgaris
Phvul.008G181100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 51226666-51228665 Phaseolus vulgaris
Phvul.008G181100 2.0kb downstream 2.0kb downstream 2786 true Chr08: 51223880-51226665 Phaseolus vulgaris
Phvul.008G181100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 51223880-51225879 Phaseolus vulgaris
Phvul.008G181100 5.0kb upstream 5.0kb upstream 5786 true Chr08: 51225880-51231665 Phaseolus vulgaris
Phvul.008G181100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 51226666-51231665 Phaseolus vulgaris
Phvul.008G181100 5.0kb downstream 5.0kb downstream 5786 true Chr08: 51220880-51226665 Phaseolus vulgaris
Phvul.008G181100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 51220880-51225879 Phaseolus vulgaris
Phvul.008G181100 10.0kb upstream 10.0kb upstream 10786 true Chr08: 51225880-51236665 Phaseolus vulgaris
Phvul.008G181100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 51226666-51236665 Phaseolus vulgaris
Phvul.008G181100 10.0kb downstream 10.0kb downstream 10786 true Chr08: 51215880-51226665 Phaseolus vulgaris
Phvul.008G181100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 51215880-51225879 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122254960 5265 Fabidae View MSA
123996885 5270 Rosid View MSA
123746080 5271 Pentapetalae View MSA
122793213 5272 Eudicot View MSA
122046470 5273 Angiosperm View MSA
121310610 5274 Embryophyte View MSA
123348051 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.825114 0.0 3.1239    
cufflinks 3.80721 0.0 12.4834    
cufflinks 6.8975 0.0 21.2253    
cufflinks 0.759695 0.0 2.86279    
cufflinks 37.254 0.0 96.9073 High High
cufflinks 2.4875 0.0 8.5663    
cufflinks 1.41456 0.0 5.08677    
cufflinks 0.346323 0.0 1.4114 Low Low
cufflinks 1.20662 0.0 4.41061    
cufflinks 8.97892 0.0 26.5572    
cufflinks 31.7095 0.0 83.2696   High

0 Strain