Gene : Phvul.008G172500 P. vulgaris v2.1
Defline:  (1 of 2) PTHR22904//PTHR22904:SF360 - TPR REPEAT CONTAINING PROTEIN // SUBFAMILY NOT NAMED Genomic Order:  1736
Name:  ? Phvul.008G172500 Secondary Identifier:  ? PAC:37158754
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Expression

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G172500 0.5kb upstream 0.5kb upstream 3982 true Chr08: 48507637-48511618 Phaseolus vulgaris
Phvul.008G172500 0.5kb upstream 0.5kb upstream 500 false Chr08: 48511119-48511618 Phaseolus vulgaris
Phvul.008G172500 0.5kb downstream 0.5kb downstream 3982 true Chr08: 48507137-48511118 Phaseolus vulgaris
Phvul.008G172500 0.5kb downstream 0.5kb downstream 500 false Chr08: 48507137-48507636 Phaseolus vulgaris
Phvul.008G172500 1.0kb upstream 1.0kb upstream 4482 true Chr08: 48507637-48512118 Phaseolus vulgaris
Phvul.008G172500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 48511119-48512118 Phaseolus vulgaris
Phvul.008G172500 1.0kb downstream 1.0kb downstream 4482 true Chr08: 48506637-48511118 Phaseolus vulgaris
Phvul.008G172500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 48506637-48507636 Phaseolus vulgaris
Phvul.008G172500 2.0kb upstream 2.0kb upstream 5482 true Chr08: 48507637-48513118 Phaseolus vulgaris
Phvul.008G172500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 48511119-48513118 Phaseolus vulgaris
Phvul.008G172500 2.0kb downstream 2.0kb downstream 5482 true Chr08: 48505637-48511118 Phaseolus vulgaris
Phvul.008G172500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 48505637-48507636 Phaseolus vulgaris
Phvul.008G172500 5.0kb upstream 5.0kb upstream 8482 true Chr08: 48507637-48516118 Phaseolus vulgaris
Phvul.008G172500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 48511119-48516118 Phaseolus vulgaris
Phvul.008G172500 5.0kb downstream 5.0kb downstream 8482 true Chr08: 48502637-48511118 Phaseolus vulgaris
Phvul.008G172500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 48502637-48507636 Phaseolus vulgaris
Phvul.008G172500 10.0kb upstream 10.0kb upstream 13482 true Chr08: 48507637-48521118 Phaseolus vulgaris
Phvul.008G172500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 48511119-48521118 Phaseolus vulgaris
Phvul.008G172500 10.0kb downstream 10.0kb downstream 13482 true Chr08: 48497637-48511118 Phaseolus vulgaris
Phvul.008G172500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 48497637-48507636 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122311538 5265 Fabidae View MSA
124069860 5270 Rosid View MSA
123742749 5271 Pentapetalae View MSA
122798057 5272 Eudicot View MSA
122047040 5273 Angiosperm View MSA
121310683 5274 Embryophyte View MSA
123348108 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.638506 0.0 2.20209    
cufflinks 0.270038 0.0 1.0087 Low Low
cufflinks 0.431997 0.0 1.54553 Low Low
cufflinks 0.492095 0.0 1.75159 Low  
cufflinks 5.53068 0.0 15.1868    
cufflinks 4.53286 0.0 12.5667    
cufflinks 7.92463 0.0 20.9616   High
cufflinks 2.08627 0.0 6.22896    
cufflinks 18.8642 0.0 48.8173   High
cufflinks 0.647219 0.0 2.23284    
cufflinks 5.00288 0.0 13.8316    

0 Strain