Gene : Phvul.008G157100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31251:SF15 - SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 3 Genomic Order:  1413
Name:  ? Phvul.008G157100 Secondary Identifier:  ? PAC:37159641
Paste the following link

Sequence Feature Displayer

Ontology Annotation Displayer

0 Pathways

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G157100 0.5kb upstream 0.5kb upstream 6467 true Chr08: 28607666-28614132 Phaseolus vulgaris
Phvul.008G157100 0.5kb upstream 0.5kb upstream 500 false Chr08: 28613633-28614132 Phaseolus vulgaris
Phvul.008G157100 0.5kb downstream 0.5kb downstream 6467 true Chr08: 28607166-28613632 Phaseolus vulgaris
Phvul.008G157100 0.5kb downstream 0.5kb downstream 500 false Chr08: 28607166-28607665 Phaseolus vulgaris
Phvul.008G157100 1.0kb upstream 1.0kb upstream 6967 true Chr08: 28607666-28614632 Phaseolus vulgaris
Phvul.008G157100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 28613633-28614632 Phaseolus vulgaris
Phvul.008G157100 1.0kb downstream 1.0kb downstream 6967 true Chr08: 28606666-28613632 Phaseolus vulgaris
Phvul.008G157100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 28606666-28607665 Phaseolus vulgaris
Phvul.008G157100 2.0kb upstream 2.0kb upstream 7967 true Chr08: 28607666-28615632 Phaseolus vulgaris
Phvul.008G157100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 28613633-28615632 Phaseolus vulgaris
Phvul.008G157100 2.0kb downstream 2.0kb downstream 7967 true Chr08: 28605666-28613632 Phaseolus vulgaris
Phvul.008G157100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 28605666-28607665 Phaseolus vulgaris
Phvul.008G157100 5.0kb upstream 5.0kb upstream 10967 true Chr08: 28607666-28618632 Phaseolus vulgaris
Phvul.008G157100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 28613633-28618632 Phaseolus vulgaris
Phvul.008G157100 5.0kb downstream 5.0kb downstream 10967 true Chr08: 28602666-28613632 Phaseolus vulgaris
Phvul.008G157100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 28602666-28607665 Phaseolus vulgaris
Phvul.008G157100 10.0kb upstream 10.0kb upstream 15967 true Chr08: 28607666-28623632 Phaseolus vulgaris
Phvul.008G157100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 28613633-28623632 Phaseolus vulgaris
Phvul.008G157100 10.0kb downstream 10.0kb downstream 15967 true Chr08: 28597666-28613632 Phaseolus vulgaris
Phvul.008G157100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 28597666-28607665 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309426 5265 Fabidae View MSA
124069875 5270 Rosid View MSA
123752325 5271 Pentapetalae View MSA
122795767 5272 Eudicot View MSA
122050333 5273 Angiosperm View MSA
123428908 5275 Viridiplantae View MSA
121351727 5274 Embryophyte View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 1.6078 0.0 5.15412    
cufflinks 0.326166 0.0 1.23181 Low  
cufflinks 2.10101 0.0 6.57325    
cufflinks 0.839561 0.0 2.90021    
cufflinks 5.24452 0.0 14.7397    
cufflinks 7.95752 0.0 21.6242   High
cufflinks 0.0170921 0.0 0.0837088 Low Low
cufflinks 0.0404183 0.0 0.18204 Low Low
cufflinks 0.0373348 0.0 0.168697 Low Low
cufflinks 0.0866152 0.0 0.363799 Low  
cufflinks 11.8127 0.0 31.0856   High

0 Strain