Gene : Phvul.008G157500 P. vulgaris v2.1
Defline:  (1 of 57) 3.2.1.15 - Polygalacturonase / Pectinase Genomic Order:  1410
Name:  ? Phvul.008G157500 Secondary Identifier:  ? PAC:37161371
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1081 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G157500 0.5kb upstream 0.5kb upstream 5738 true Chr08: 28331653-28337390 Phaseolus vulgaris
Phvul.008G157500 0.5kb upstream 0.5kb upstream 500 false Chr08: 28331653-28332152 Phaseolus vulgaris
Phvul.008G157500 0.5kb downstream 0.5kb downstream 5738 true Chr08: 28332153-28337890 Phaseolus vulgaris
Phvul.008G157500 0.5kb downstream 0.5kb downstream 500 false Chr08: 28337391-28337890 Phaseolus vulgaris
Phvul.008G157500 1.0kb upstream 1.0kb upstream 6238 true Chr08: 28331153-28337390 Phaseolus vulgaris
Phvul.008G157500 1.0kb upstream 1.0kb upstream 1000 false Chr08: 28331153-28332152 Phaseolus vulgaris
Phvul.008G157500 1.0kb downstream 1.0kb downstream 6238 true Chr08: 28332153-28338390 Phaseolus vulgaris
Phvul.008G157500 1.0kb downstream 1.0kb downstream 1000 false Chr08: 28337391-28338390 Phaseolus vulgaris
Phvul.008G157500 2.0kb upstream 2.0kb upstream 7238 true Chr08: 28330153-28337390 Phaseolus vulgaris
Phvul.008G157500 2.0kb upstream 2.0kb upstream 2000 false Chr08: 28330153-28332152 Phaseolus vulgaris
Phvul.008G157500 2.0kb downstream 2.0kb downstream 7238 true Chr08: 28332153-28339390 Phaseolus vulgaris
Phvul.008G157500 2.0kb downstream 2.0kb downstream 2000 false Chr08: 28337391-28339390 Phaseolus vulgaris
Phvul.008G157500 5.0kb upstream 5.0kb upstream 10238 true Chr08: 28327153-28337390 Phaseolus vulgaris
Phvul.008G157500 5.0kb upstream 5.0kb upstream 5000 false Chr08: 28327153-28332152 Phaseolus vulgaris
Phvul.008G157500 5.0kb downstream 5.0kb downstream 10238 true Chr08: 28332153-28342390 Phaseolus vulgaris
Phvul.008G157500 5.0kb downstream 5.0kb downstream 5000 false Chr08: 28337391-28342390 Phaseolus vulgaris
Phvul.008G157500 10.0kb upstream 10.0kb upstream 15238 true Chr08: 28322153-28337390 Phaseolus vulgaris
Phvul.008G157500 10.0kb upstream 10.0kb upstream 10000 false Chr08: 28322153-28332152 Phaseolus vulgaris
Phvul.008G157500 10.0kb downstream 10.0kb downstream 15238 true Chr08: 28332153-28347390 Phaseolus vulgaris
Phvul.008G157500 10.0kb downstream 10.0kb downstream 10000 false Chr08: 28337391-28347390 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122314178 5265 Fabidae View MSA
124070803 5270 Rosid View MSA
123753570 5271 Pentapetalae View MSA
122797497 5272 Eudicot View MSA
122051291 5273 Angiosperm View MSA
121350352 5274 Embryophyte View MSA
123381691 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 8.04535 0.0 27.8301    
cufflinks 85.9985 0.0 267.023 High  
cufflinks 0.0695204 0.0 0.326835 Low Low
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed
cufflinks 0.0 0.0 0.0 Not Expressed Not Expressed

0 Strain