Gene : Phvul.008G158136 P. vulgaris v2.1
Defline:  (1 of 2) PTHR13301//PTHR13301:SF41 - X-BOX TRANSCRIPTION FACTOR-RELATED // SUBFAMILY NOT NAMED Genomic Order:  1550
Name:  ? Phvul.008G158136 Secondary Identifier:  ? PAC:37160827
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Sequence Feature Displayer

Ontology Annotation Displayer

1 Pathways

Pathway Identifier Organism Name Analysis Method Analysis Status
Pvulgaris PWY-1001 Phaseolus vulgaris pathologic  

Genomics

Gene Ontology Displayer

Gene Structure Displayer

Expression

Correlated Expression Displayer

Cufflinks Score Displayer

 

Other

2 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G158136 0.5kb upstream 0.5kb upstream 3996 true Chr08: 39396384-39400379 Phaseolus vulgaris
Phvul.008G158136 0.5kb upstream 0.5kb upstream 500 false Chr08: 39399880-39400379 Phaseolus vulgaris
Phvul.008G158136 0.5kb downstream 0.5kb downstream 3996 true Chr08: 39395884-39399879 Phaseolus vulgaris
Phvul.008G158136 0.5kb downstream 0.5kb downstream 500 false Chr08: 39395884-39396383 Phaseolus vulgaris
Phvul.008G158136 1.0kb upstream 1.0kb upstream 4496 true Chr08: 39396384-39400879 Phaseolus vulgaris
Phvul.008G158136 1.0kb upstream 1.0kb upstream 1000 false Chr08: 39399880-39400879 Phaseolus vulgaris
Phvul.008G158136 1.0kb downstream 1.0kb downstream 4496 true Chr08: 39395384-39399879 Phaseolus vulgaris
Phvul.008G158136 1.0kb downstream 1.0kb downstream 1000 false Chr08: 39395384-39396383 Phaseolus vulgaris
Phvul.008G158136 2.0kb upstream 2.0kb upstream 5496 true Chr08: 39396384-39401879 Phaseolus vulgaris
Phvul.008G158136 2.0kb upstream 2.0kb upstream 2000 false Chr08: 39399880-39401879 Phaseolus vulgaris
Phvul.008G158136 2.0kb downstream 2.0kb downstream 5496 true Chr08: 39394384-39399879 Phaseolus vulgaris
Phvul.008G158136 2.0kb downstream 2.0kb downstream 2000 false Chr08: 39394384-39396383 Phaseolus vulgaris
Phvul.008G158136 5.0kb upstream 5.0kb upstream 8496 true Chr08: 39396384-39404879 Phaseolus vulgaris
Phvul.008G158136 5.0kb upstream 5.0kb upstream 5000 false Chr08: 39399880-39404879 Phaseolus vulgaris
Phvul.008G158136 5.0kb downstream 5.0kb downstream 8496 true Chr08: 39391384-39399879 Phaseolus vulgaris
Phvul.008G158136 5.0kb downstream 5.0kb downstream 5000 false Chr08: 39391384-39396383 Phaseolus vulgaris
Phvul.008G158136 10.0kb upstream 10.0kb upstream 13496 true Chr08: 39396384-39409879 Phaseolus vulgaris
Phvul.008G158136 10.0kb upstream 10.0kb upstream 10000 false Chr08: 39399880-39409879 Phaseolus vulgaris
Phvul.008G158136 10.0kb downstream 10.0kb downstream 13496 true Chr08: 39386384-39399879 Phaseolus vulgaris
Phvul.008G158136 10.0kb downstream 10.0kb downstream 10000 false Chr08: 39386384-39396383 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122309823 5265 Fabidae View MSA
124070260 5270 Rosid View MSA
123753400 5271 Pentapetalae View MSA
122797245 5272 Eudicot View MSA
122051318 5273 Angiosperm View MSA
121351501 5274 Embryophyte View MSA
123382193 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 28.684 0.0 74.5949    
cufflinks 44.3907 0.0 118.08 High  
cufflinks 71.3542 0.0 199.211 High High
cufflinks 19.8863 0.0 51.4192    
cufflinks 23.3282 0.0 60.3196    
cufflinks 25.3493 0.0 65.6903    
cufflinks 8.83125 0.0 23.5774    
cufflinks 7.06469 0.0 19.0968   Low
cufflinks 3.32597 0.0 9.74007   Low
cufflinks 126.948 0.0 377.937 High High
cufflinks 22.7731 0.0 58.8697    

0 Strain