Gene : Phvul.008G161100 P. vulgaris v2.1
Defline:  (1 of 2) PTHR31580:SF2 - FILAMENT-LIKE PLANT PROTEIN 1-RELATED Genomic Order:  1608
Name:  ? Phvul.008G161100 Secondary Identifier:  ? PAC:37159345
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Ontology Annotation Displayer

0 Pathways

Genomics

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Expression

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Cufflinks Score Displayer

 

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1 Synonyms

20 Flanking Regions

Region Name Flank Size Direction Length Gene Included? Chromosome Location Organism Name
Phvul.008G161100 0.5kb upstream 0.5kb upstream 5930 true Chr08: 43796775-43802704 Phaseolus vulgaris
Phvul.008G161100 0.5kb upstream 0.5kb upstream 500 false Chr08: 43802205-43802704 Phaseolus vulgaris
Phvul.008G161100 0.5kb downstream 0.5kb downstream 5930 true Chr08: 43796275-43802204 Phaseolus vulgaris
Phvul.008G161100 0.5kb downstream 0.5kb downstream 500 false Chr08: 43796275-43796774 Phaseolus vulgaris
Phvul.008G161100 1.0kb upstream 1.0kb upstream 6430 true Chr08: 43796775-43803204 Phaseolus vulgaris
Phvul.008G161100 1.0kb upstream 1.0kb upstream 1000 false Chr08: 43802205-43803204 Phaseolus vulgaris
Phvul.008G161100 1.0kb downstream 1.0kb downstream 6430 true Chr08: 43795775-43802204 Phaseolus vulgaris
Phvul.008G161100 1.0kb downstream 1.0kb downstream 1000 false Chr08: 43795775-43796774 Phaseolus vulgaris
Phvul.008G161100 2.0kb upstream 2.0kb upstream 7430 true Chr08: 43796775-43804204 Phaseolus vulgaris
Phvul.008G161100 2.0kb upstream 2.0kb upstream 2000 false Chr08: 43802205-43804204 Phaseolus vulgaris
Phvul.008G161100 2.0kb downstream 2.0kb downstream 7430 true Chr08: 43794775-43802204 Phaseolus vulgaris
Phvul.008G161100 2.0kb downstream 2.0kb downstream 2000 false Chr08: 43794775-43796774 Phaseolus vulgaris
Phvul.008G161100 5.0kb upstream 5.0kb upstream 10430 true Chr08: 43796775-43807204 Phaseolus vulgaris
Phvul.008G161100 5.0kb upstream 5.0kb upstream 5000 false Chr08: 43802205-43807204 Phaseolus vulgaris
Phvul.008G161100 5.0kb downstream 5.0kb downstream 10430 true Chr08: 43791775-43802204 Phaseolus vulgaris
Phvul.008G161100 5.0kb downstream 5.0kb downstream 5000 false Chr08: 43791775-43796774 Phaseolus vulgaris
Phvul.008G161100 10.0kb upstream 10.0kb upstream 15430 true Chr08: 43796775-43812204 Phaseolus vulgaris
Phvul.008G161100 10.0kb upstream 10.0kb upstream 10000 false Chr08: 43802205-43812204 Phaseolus vulgaris
Phvul.008G161100 10.0kb downstream 10.0kb downstream 15430 true Chr08: 43786775-43802204 Phaseolus vulgaris
Phvul.008G161100 10.0kb downstream 10.0kb downstream 10000 false Chr08: 43786775-43796774 Phaseolus vulgaris

7 Protein Familys

Cluster ID Method ID Method Name Sequence Alignment
122313865 5265 Fabidae View MSA
124071762 5270 Rosid View MSA
123742978 5271 Pentapetalae View MSA
122791145 5272 Eudicot View MSA
122043487 5273 Angiosperm View MSA
121310135 5274 Embryophyte View MSA
123347707 5275 Viridiplantae View MSA

11 Rna Seq Expressionss

Analysis Method Abundance Low Confidence Limit High Confidence Limit Relative Library Expression Relative Locus Expression
cufflinks 2.75178 0.0 10.7661    
cufflinks 16.0807 0.0 51.2495   High
cufflinks 11.3576 0.0 36.0011    
cufflinks 2.45541 0.0 8.71689    
cufflinks 5.95804 0.0 20.3492    
cufflinks 17.5909 0.0 56.4571   High
cufflinks 6.07102 0.0 20.3701    
cufflinks 11.1959 0.0 35.4705    
cufflinks 3.79294 0.0 11.9598    
cufflinks 0.901359 0.0 4.07678   Low
cufflinks 7.52416 0.0 24.6486    

0 Strain